; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032604 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032604
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold11:6386486..6388851
RNA-Seq ExpressionSpg032604
SyntenySpg032604
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN59965.1 hypothetical protein VITISV_022758, partial [Vitis vinifera]9.1e-3341.11Show/hide
Query:  EAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSHHFFLRTVESWWKTSTSHG
        E+ L D PL N  FTWS+ + +P    +DRFL S+     F  +    L R TSDH+PI L     +WG TPFRF N+WL HH F  +  SWW+    +G
Subjt:  EAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSHHFFLRTVESWWKTSTSHG

Query:  WPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        W  H F++KL+ +K +LK WN++ FG  KE+K  +  E+A I   E  G LS    +++   K EL     +EEI WR+K
Subjt:  WPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

CAN66330.1 hypothetical protein VITISV_000598 [Vitis vinifera]1.4e-3339.9Show/hide
Query:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH
        + GS+  SS    +  + E+ L D PL N  FTWS+ + +P    +DRFL S+   + F  +    L R TSDH+PI L     +WG TPFRF N+WL H
Subjt:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH

Query:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        H F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +S E+A ID  E  G LS      +   K EL     +EEI W++K
Subjt:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

RVW77758.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.8e-3339.9Show/hide
Query:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH
        + GS+  SS    +  + E+ L D PL N  FTWS+ + +P    +DRFL S+   + F  +    L R TSDH+PI L     +WG TPFRF N+WL H
Subjt:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH

Query:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        H F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +S E+A ID  E  G LS      +   K EL     +EEI W++K
Subjt:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

RVW99725.1 DNA repair protein RAD50 [Vitis vinifera]5.3e-3339.39Show/hide
Query:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH
        + GS+  SS    +  + E+ L D PL N  FTWS+ + +P    +DRFL S+   + F  +    L R TSDH+PI L     +WG TPFRF N+WL H
Subjt:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH

Query:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        + F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +S E+A ID  E  G LS     ++   K EL     +EEI W++K
Subjt:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

RVX20162.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]4.1e-3339.11Show/hide
Query:  SGQLMAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINV
        S + + GS+  SS    +  + E+ L D PL N  FTWS+ + +     +DRFL S+     F  +    L R TSDH+PI L     +WG TPFRF N+
Subjt:  SGQLMAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINV

Query:  WLSHHFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWR
        WL HH F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +  E+A ID  E  G LS    +++   K EL     +EEI WR
Subjt:  WLSHHFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWR

Query:  KK
        +K
Subjt:  KK

TrEMBL top hitse value%identityAlignment
A0A438GZW0 LINE-1 retrotransposable element ORF2 protein8.9e-3439.9Show/hide
Query:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH
        + GS+  SS    +  + E+ L D PL N  FTWS+ + +P    +DRFL S+   + F  +    L R TSDH+PI L     +WG TPFRF N+WL H
Subjt:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH

Query:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        H F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +S E+A ID  E  G LS      +   K EL     +EEI W++K
Subjt:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

A0A438ISX9 DNA repair protein RAD502.6e-3339.39Show/hide
Query:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH
        + GS+  SS    +  + E+ L D PL N  FTWS+ + +P    +DRFL S+   + F  +    L R TSDH+PI L     +WG TPFRF N+WL H
Subjt:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH

Query:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        + F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +S E+A ID  E  G LS     ++   K EL     +EEI W++K
Subjt:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

A0A438KG26 Transposon TX1 uncharacterized 149 kDa protein2.0e-3339.11Show/hide
Query:  SGQLMAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINV
        S + + GS+  SS    +  + E+ L D PL N  FTWS+ + +     +DRFL S+     F  +    L R TSDH+PI L     +WG TPFRF N+
Subjt:  SGQLMAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINV

Query:  WLSHHFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWR
        WL HH F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +  E+A ID  E  G LS    +++   K EL     +EEI WR
Subjt:  WLSHHFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWR

Query:  KK
        +K
Subjt:  KK

A5B7Z9 Reverse transcriptase domain-containing protein (Fragment)4.4e-3341.11Show/hide
Query:  EAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSHHFFLRTVESWWKTSTSHG
        E+ L D PL N  FTWS+ + +P    +DRFL S+     F  +    L R TSDH+PI L     +WG TPFRF N+WL HH F  +  SWW+    +G
Subjt:  EAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSHHFFLRTVESWWKTSTSHG

Query:  WPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        W  H F++KL+ +K +LK WN++ FG  KE+K  +  E+A I   E  G LS    +++   K EL     +EEI WR+K
Subjt:  WPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

A5C3T9 Uncharacterized protein6.8e-3439.9Show/hide
Query:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH
        + GS+  SS    +  + E+ L D PL N  FTWS+ + +P    +DRFL S+   + F  +    L R TSDH+PI L     +WG TPFRF N+WL H
Subjt:  MAGSQNESSFSVLE--VIEAALQDIPLSNGKFTWSSFRPNPTMTLIDRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSH

Query:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK
        H F  +  SWW+    +GW  H F++KL+ +K +LK WN++ FG  KE+K  +S E+A ID  E  G LS      +   K EL     +EEI W++K
Subjt:  HFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQELATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGGTGAACCAAAAGTTCCATCTTATGGGGGATGGATCAAAGTCAGAAACCTCCCCCTGGATAAATGGTCCATTAGTACATTTAAGAAAATCGGAGATGAATGTGG
AGGATATTTGGAAACTGGCAACAAAACTCTCTCTCGTATGGACATGATGGAGATAGGCATCAAGGTTAGAGAGAATGACACAGGGTTCATCCCAGCAGAAGTGCATCTCC
CATCGTCTTCTTGCAATCCCACCGTGGTTAAAATCGATCCCTTTTATGTTGAAGATTACAGTATAGGCTACATTGCCGGCGTCCATGGCCGAATACCAAAGCCACCGATG
GAATTCCATAACCCACGCGCCAATCATGAACATGAAGGAGAACAAAAAGGAAAAAGGGATAGTCCACGCGCCGCCGTCCTAGGTATAAAGGATAATGTGCAGGAAAAATC
CCTGAGCTCGTACAGATATGAAGTCCAAAGCGCCCCTATTGATGATCTGTTCACCACAACCTCTCTATCCTCAGCCATTGATCACCAACCTCTCATTGAAGATCCAACTC
CCTTGCGAGTTGAAGAACCAGACTCCCAGAGCTTGCATCAAAACAGAGACCTGATGGCAACAACCCTCATTGATATTGAGGTGGAAGATACAGAAACAGAGGAATTGGAA
ACAGAGGGCATCAGAATTGATCCAGCCGTTTACCTTCTCTACCTCTTTCCATGGTTAACCGAACATGGAATGTGCATTATGCCAATGCCCAGCAGACGCAAAACCTCAGC
CTCCACAAAGAAAAAAGTCATGTGGGTCAAGGAACTCCAGAATCTCCATTCCACAGTTAATTATGAGAAGAATCCATCGGGCCAACTTATGGCAGGGTCGCAAAATGAAT
CCTCCTTCTCTGTTTTGGAGGTTATTGAAGCTGCCCTTCAAGACATCCCTCTCTCTAATGGCAAGTTCACTTGGTCTAGTTTCAGGCCAAATCCCACCATGACTCTCATT
GACAGGTTCCTTCTATCCGACCATATTCCCATCAAATTCGGTTCAGCTTATGCTCGCAGACTAGAAAGAGTCACCTCCGATCATTATCCAATCTGCTTGTTTCTCGGTAA
TGACCGTTGGGGCTCGACTCCTTTCAGATTCATTAATGTCTGGCTTTCTCACCACTTCTTCCTTCGCACGGTCGAATCATGGTGGAAGACCTCCACCTCTCATGGATGGC
CCGACCACGGGTTCATTCAAAAGCTTAAGGGGCTGAAGATGGAGTTGAAACACTGGAACCAATCTGTCTTTGGTAATCAAAAAGAACAAAAGGCCAAGCTTAGCCAAGAA
CTCGCGACTATTGATACAAAAGAAGATAGTGGCCATCTATCTGATCAAGATTATATCAGAAAAACTGAGATCAAGGCTGAATTGATGATGTTTTCGGCCAAAGAAGAAAT
TATGTGGAGGAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGGTGAACCAAAAGTTCCATCTTATGGGGGATGGATCAAAGTCAGAAACCTCCCCCTGGATAAATGGTCCATTAGTACATTTAAGAAAATCGGAGATGAATGTGG
AGGATATTTGGAAACTGGCAACAAAACTCTCTCTCGTATGGACATGATGGAGATAGGCATCAAGGTTAGAGAGAATGACACAGGGTTCATCCCAGCAGAAGTGCATCTCC
CATCGTCTTCTTGCAATCCCACCGTGGTTAAAATCGATCCCTTTTATGTTGAAGATTACAGTATAGGCTACATTGCCGGCGTCCATGGCCGAATACCAAAGCCACCGATG
GAATTCCATAACCCACGCGCCAATCATGAACATGAAGGAGAACAAAAAGGAAAAAGGGATAGTCCACGCGCCGCCGTCCTAGGTATAAAGGATAATGTGCAGGAAAAATC
CCTGAGCTCGTACAGATATGAAGTCCAAAGCGCCCCTATTGATGATCTGTTCACCACAACCTCTCTATCCTCAGCCATTGATCACCAACCTCTCATTGAAGATCCAACTC
CCTTGCGAGTTGAAGAACCAGACTCCCAGAGCTTGCATCAAAACAGAGACCTGATGGCAACAACCCTCATTGATATTGAGGTGGAAGATACAGAAACAGAGGAATTGGAA
ACAGAGGGCATCAGAATTGATCCAGCCGTTTACCTTCTCTACCTCTTTCCATGGTTAACCGAACATGGAATGTGCATTATGCCAATGCCCAGCAGACGCAAAACCTCAGC
CTCCACAAAGAAAAAAGTCATGTGGGTCAAGGAACTCCAGAATCTCCATTCCACAGTTAATTATGAGAAGAATCCATCGGGCCAACTTATGGCAGGGTCGCAAAATGAAT
CCTCCTTCTCTGTTTTGGAGGTTATTGAAGCTGCCCTTCAAGACATCCCTCTCTCTAATGGCAAGTTCACTTGGTCTAGTTTCAGGCCAAATCCCACCATGACTCTCATT
GACAGGTTCCTTCTATCCGACCATATTCCCATCAAATTCGGTTCAGCTTATGCTCGCAGACTAGAAAGAGTCACCTCCGATCATTATCCAATCTGCTTGTTTCTCGGTAA
TGACCGTTGGGGCTCGACTCCTTTCAGATTCATTAATGTCTGGCTTTCTCACCACTTCTTCCTTCGCACGGTCGAATCATGGTGGAAGACCTCCACCTCTCATGGATGGC
CCGACCACGGGTTCATTCAAAAGCTTAAGGGGCTGAAGATGGAGTTGAAACACTGGAACCAATCTGTCTTTGGTAATCAAAAAGAACAAAAGGCCAAGCTTAGCCAAGAA
CTCGCGACTATTGATACAAAAGAAGATAGTGGCCATCTATCTGATCAAGATTATATCAGAAAAACTGAGATCAAGGCTGAATTGATGATGTTTTCGGCCAAAGAAGAAAT
TATGTGGAGGAAAAAATGA
Protein sequenceShow/hide protein sequence
MLGEPKVPSYGGWIKVRNLPLDKWSISTFKKIGDECGGYLETGNKTLSRMDMMEIGIKVRENDTGFIPAEVHLPSSSCNPTVVKIDPFYVEDYSIGYIAGVHGRIPKPPM
EFHNPRANHEHEGEQKGKRDSPRAAVLGIKDNVQEKSLSSYRYEVQSAPIDDLFTTTSLSSAIDHQPLIEDPTPLRVEEPDSQSLHQNRDLMATTLIDIEVEDTETEELE
TEGIRIDPAVYLLYLFPWLTEHGMCIMPMPSRRKTSASTKKKVMWVKELQNLHSTVNYEKNPSGQLMAGSQNESSFSVLEVIEAALQDIPLSNGKFTWSSFRPNPTMTLI
DRFLLSDHIPIKFGSAYARRLERVTSDHYPICLFLGNDRWGSTPFRFINVWLSHHFFLRTVESWWKTSTSHGWPDHGFIQKLKGLKMELKHWNQSVFGNQKEQKAKLSQE
LATIDTKEDSGHLSDQDYIRKTEIKAELMMFSAKEEIMWRKK