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Spg032615 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032615
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold11:7003759..7012496
RNA-Seq ExpressionSpg032615
SyntenySpg032615
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-1543.7Show/hide
Query:  SVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFE
        S+E ++E W +VTRR  +K    Q++   +RNY+R+N +QK K+KKK +RKPKLV E+++DF  P+  VT+ D FP  FL D  ++ PE++TCH +NA E
Subjt:  SVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFE

Query:  EGDSSSSPSQNVKKESIEE
        E    S PS+++++E + +
Subjt:  EGDSSSSPSQNVKKESIEE

KAA0054153.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-1643.55Show/hide
Query:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA
        Q++   +E +DE WT+VTRRK +K   +Q+KP  ++NY+R N +QK K+KKK +RK KLV E+++DF   +  VTL DFFP  FL D  ++ P +V CHA
Subjt:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA

Query:  VNAFEEGDSSSSPSQNVKKESIEE
        +N  EE    S P +++++E + +
Subjt:  VNAFEEGDSSSSPSQNVKKESIEE

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-1642.74Show/hide
Query:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA
        Q++  S+E +DE WT+VTRRK +K   +Q++P  +RNY+R N +QK K+KKK ++K KL+ E+++DF   +  VTL +FFP  FL D  ++ PE+V CHA
Subjt:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA

Query:  VNAFEEGDSSSSPSQNVKKESIEE
        ++A EE    S P +++++E + +
Subjt:  VNAFEEGDSSSSPSQNVKKESIEE

KAA0064171.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-1548.25Show/hide
Query:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA
        Q++   +E +DE WT+VTRRK +K   +Q++P  +RNY+R N +QK K+KKK +RK KLV E+++DF   +  VTL DFFP  FL D   + P +V CHA
Subjt:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA

Query:  VNAFEEGDSSSSPS
        +NA EE  S +S S
Subjt:  VNAFEEGDSSSSPS

KAA0067092.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-1641.73Show/hide
Query:  LSPISLLYSAPKMEMRND-----PSKKSSSDTFQDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDF
        LSP +LL    KM+ + +     P+ + + +  Q + +S + +DE W +VTR+K +K    Q++ H ++NY+R N  Q+ K+KKK +RKPKLV E+N+DF
Subjt:  LSPISLLYSAPKMEMRND-----PSKKSSSDTFQDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDF

Query:  VLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFEE
          P+  +TL DFFP  FL D  ++ PE+V CHA+N  EE
Subjt:  VLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFEE

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein5.0e-1643.7Show/hide
Query:  SVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFE
        S+E ++E W +VTRR  +K    Q++   +RNY+R+N +QK K+KKK +RKPKLV E+++DF  P+  VT+ D FP  FL D  ++ PE++TCH +NA E
Subjt:  SVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFE

Query:  EGDSSSSPSQNVKKESIEE
        E    S PS+++++E + +
Subjt:  EGDSSSSPSQNVKKESIEE

A0A5A7UDR5 Ty3-gypsy retrotransposon protein2.9e-1643.55Show/hide
Query:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA
        Q++   +E +DE WT+VTRRK +K   +Q+KP  ++NY+R N +QK K+KKK +RK KLV E+++DF   +  VTL DFFP  FL D  ++ P +V CHA
Subjt:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA

Query:  VNAFEEGDSSSSPSQNVKKESIEE
        +N  EE    S P +++++E + +
Subjt:  VNAFEEGDSSSSPSQNVKKESIEE

A0A5A7VEL0 Ty3-gypsy retrotransposon protein5.0e-1648.25Show/hide
Query:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA
        Q++   +E +DE WT+VTRRK +K   +Q++P  +RNY+R N +QK K+KKK +RK KLV E+++DF   +  VTL DFFP  FL D   + P +V CHA
Subjt:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA

Query:  VNAFEEGDSSSSPS
        +NA EE  S +S S
Subjt:  VNAFEEGDSSSSPS

A0A5D3BE72 Ty3-gypsy retrotransposon protein3.8e-1642.74Show/hide
Query:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA
        Q++  S+E +DE WT+VTRRK +K   +Q++P  +RNY+R N +QK K+KKK ++K KL+ E+++DF   +  VTL +FFP  FL D  ++ PE+V CHA
Subjt:  QDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHA

Query:  VNAFEEGDSSSSPSQNVKKESIEE
        ++A EE    S P +++++E + +
Subjt:  VNAFEEGDSSSSPSQNVKKESIEE

A0A5D3DRM3 Ty3-gypsy retrotransposon protein1.7e-1641.73Show/hide
Query:  LSPISLLYSAPKMEMRND-----PSKKSSSDTFQDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDF
        LSP +LL    KM+ + +     P+ + + +  Q + +S + +DE W +VTR+K +K    Q++ H ++NY+R N  Q+ K+KKK +RKPKLV E+N+DF
Subjt:  LSPISLLYSAPKMEMRND-----PSKKSSSDTFQDQLESVENEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDF

Query:  VLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFEE
          P+  +TL DFFP  FL D  ++ PE+V CHA+N  EE
Subjt:  VLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGTCGAGATGTTGCTGAATCGAGTCAAACCCGTGCCATCAAAGACAAGGGAAAGATTATTGCACAAGATCAGTCACAACACTCCACTTCTATTGCTTCACTATT
TGTACAACAGCTCCAGGATATGATCATGAATACCATCAGAGCTCAATATGGACTTCAAACCCCAAAGGAAGTTAGGGAGGTGGGATCCACTTCCCTAGGTTGTCTAGTGA
GTAATGTGGCAGATGAATCATTGGCACCCATTCAAGAGCTTAGTTCTTTCGATTTTGCTACGGATGAGCATTTAGGGGTGAGTTGCATAGATAGAGGAGAAGAATTGGAG
AGTTGTAGCACCTATCAAGAACGTGTTTGTGAGGAAGGAAAAGAAAATGAGCTTGTAGTGTCAGAGAAAGTTCAGGAGGTAGAGTTTGAGGTTGAACAACCTTCGTCTGT
TTTATCTTCTCCATCCTTTGTCTTGGTTCCAATTTCTTCTTTGCTTGCAAGCTTCCATAAAAGAGGACATCGTCATTCCAGGACAGTATTGTTCACTCCTCCTACTCTTT
TATTGTCTCCAATCTCTCTCCTCTATTCGGCTCCCAAAATGGAAATGAGAAATGATCCGTCCAAAAAATCTTCAAGTGACACCTTCCAAGACCAACTTGAGTCTGTTGAA
AATGAAGACGAAAGATGGACTTTGGTAACTCGTCGAAAGATGCAAAAGAAACATTTCGTTCAAAGAAAGCCTCACATGTTCCGAAACTACAAAAGAAAGAACATATCACA
AAAGCAGAAGAGAAAGAAAAAAGGCTCAAGAAAACCTAAACTGGTTGTTGAAAAGAATCAAGATTTTGTTCTACCGCGACATTCAGTAACCCTTAAAGATTTCTTCCCAA
ATAACTTTCTTAATGACGATCATGAGGATATCCCTGAGATAGTCACATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCTTCAAGTCCATCTCAGAATGTGAAG
AAAGAGTCGATCGAAGAAGTAGATGTTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCGAATGTTCCAAAGGAAGAGGCATCGTCAAACGTCCCTAT
ATTACGCTACGTTCCTTTATCTCGGCGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGTCGAGATGTTGCTGAATCGAGTCAAACCCGTGCCATCAAAGACAAGGGAAAGATTATTGCACAAGATCAGTCACAACACTCCACTTCTATTGCTTCACTATT
TGTACAACAGCTCCAGGATATGATCATGAATACCATCAGAGCTCAATATGGACTTCAAACCCCAAAGGAAGTTAGGGAGGTGGGATCCACTTCCCTAGGTTGTCTAGTGA
GTAATGTGGCAGATGAATCATTGGCACCCATTCAAGAGCTTAGTTCTTTCGATTTTGCTACGGATGAGCATTTAGGGGTGAGTTGCATAGATAGAGGAGAAGAATTGGAG
AGTTGTAGCACCTATCAAGAACGTGTTTGTGAGGAAGGAAAAGAAAATGAGCTTGTAGTGTCAGAGAAAGTTCAGGAGGTAGAGTTTGAGGTTGAACAACCTTCGTCTGT
TTTATCTTCTCCATCCTTTGTCTTGGTTCCAATTTCTTCTTTGCTTGCAAGCTTCCATAAAAGAGGACATCGTCATTCCAGGACAGTATTGTTCACTCCTCCTACTCTTT
TATTGTCTCCAATCTCTCTCCTCTATTCGGCTCCCAAAATGGAAATGAGAAATGATCCGTCCAAAAAATCTTCAAGTGACACCTTCCAAGACCAACTTGAGTCTGTTGAA
AATGAAGACGAAAGATGGACTTTGGTAACTCGTCGAAAGATGCAAAAGAAACATTTCGTTCAAAGAAAGCCTCACATGTTCCGAAACTACAAAAGAAAGAACATATCACA
AAAGCAGAAGAGAAAGAAAAAAGGCTCAAGAAAACCTAAACTGGTTGTTGAAAAGAATCAAGATTTTGTTCTACCGCGACATTCAGTAACCCTTAAAGATTTCTTCCCAA
ATAACTTTCTTAATGACGATCATGAGGATATCCCTGAGATAGTCACATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCTTCAAGTCCATCTCAGAATGTGAAG
AAAGAGTCGATCGAAGAAGTAGATGTTTGTGAAGTTCAATCAAAGGAAGCATCCGCTCACCCTGCAAAATCGAATGTTCCAAAGGAAGAGGCATCGTCAAACGTCCCTAT
ATTACGCTACGTTCCTTTATCTCGGCGCGAGTAA
Protein sequenceShow/hide protein sequence
MESRDVAESSQTRAIKDKGKIIAQDQSQHSTSIASLFVQQLQDMIMNTIRAQYGLQTPKEVREVGSTSLGCLVSNVADESLAPIQELSSFDFATDEHLGVSCIDRGEELE
SCSTYQERVCEEGKENELVVSEKVQEVEFEVEQPSSVLSSPSFVLVPISSLLASFHKRGHRHSRTVLFTPPTLLLSPISLLYSAPKMEMRNDPSKKSSSDTFQDQLESVE
NEDERWTLVTRRKMQKKHFVQRKPHMFRNYKRKNISQKQKRKKKGSRKPKLVVEKNQDFVLPRHSVTLKDFFPNNFLNDDHEDIPEIVTCHAVNAFEEGDSSSSPSQNVK
KESIEEVDVCEVQSKEASAHPAKSNVPKEEASSNVPILRYVPLSRRE