; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032666 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032666
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold11:7123256..7128537
RNA-Seq ExpressionSpg032666
SyntenySpg032666
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC17873.1 40S ribosomal protein S13 [Morus notabilis]1.5e-1990.16Show/hide
Query:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

KAE8693790.1 40S ribosomal protein S13 [Hibiscus syriacus]5.2e-2084.06Show/hide
Query:  LVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LV L L  LA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

KAG5558428.1 hypothetical protein RHGRI_008383 [Rhododendron griersonianum]8.8e-2063.83Show/hide
Query:  ASKGVGLTLIPTAPQVSLARQKYRMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        A KG+  + I    + S    + + +   +++RLA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  ASKGVGLTLIPTAPQVSLARQKYRMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

MCH95069.1 40S ribosomal protein S13-like [Trifolium medium]1.5e-1990.16Show/hide
Query:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

RYR57364.1 hypothetical protein Ahy_A05g023101 isoform C [Arachis hypogaea]8.8e-2090.16Show/hide
Query:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

TrEMBL top hitse value%identityAlignment
A0A392Q0M3 40S ribosomal protein S13-like (Fragment)7.3e-2090.16Show/hide
Query:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

A0A445D2V6 Uncharacterized protein4.3e-2090.16Show/hide
Query:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

A0A6A2ZPW0 40S ribosomal protein S132.5e-2084.06Show/hide
Query:  LVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LV L L  LA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

A0A6A5LRG2 Putative ribosomal protein S159.5e-2080.28Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

W9RYU7 40S ribosomal protein S137.3e-2090.16Show/hide
Query:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  LALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S134.8e-2178.87Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK VS RKHLER  KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

P59223 40S ribosomal protein S13-19.8e-2278.87Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

P59224 40S ribosomal protein S13-29.8e-2278.87Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

P62299 40S ribosomal protein S135.4e-2060.44Show/hide
Query:  VGLTLIPTAPQVSLARQKYRMLVR-LRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        +G+ L  +     + R     +VR L+   +A EIPEDLYHLIKK V+ RKHLERN KDKDSK+RLILVESRIHRLARYYK K++LP  WK
Subjt:  VGLTLIPTAPQVSLARQKYRMLVR-LRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

P62302 40S ribosomal protein S134.4e-2280.28Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK VS RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S156.9e-2378.87Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK

AT4G00100.1 ribosomal protein S13A6.9e-2378.87Show/hide
Query:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK
        ++L  L+   LA EIPEDLYHLIKK V+ RKHLERN KDKDSKFRLILVESRIHRLARYYKK KKLP VWK
Subjt:  RMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHRLARYYKKKKKLPLVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGTTGTCCATTATTTGTCGTCGTCTACTACTCTTTCGTTCGAGTGATTGCTTCCCTTGTTCTAAGAAATGGTGGTCGTTTGCTCGTCTCAGCCTCCAAGGGGGT
TGGCCTCACTCTCATTCCCACTGCCCCTCAAGTCTCGCTTGCTCGTCAAAAGTACAGGATGCTTGTGAGGCTGCGATTAATGAGGCTAGCTCTTGAAATCCCGGAGGATC
TTTACCATCTCATCAAGAAAACTGTTTCAACCAGAAAGCATTTGGAGAGAAACGGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATCGC
CTGGCCCGGTATTACAAGAAGAAAAAGAAGCTTCCCCTTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGTTGTCCATTATTTGTCGTCGTCTACTACTCTTTCGTTCGAGTGATTGCTTCCCTTGTTCTAAGAAATGGTGGTCGTTTGCTCGTCTCAGCCTCCAAGGGGGT
TGGCCTCACTCTCATTCCCACTGCCCCTCAAGTCTCGCTTGCTCGTCAAAAGTACAGGATGCTTGTGAGGCTGCGATTAATGAGGCTAGCTCTTGAAATCCCGGAGGATC
TTTACCATCTCATCAAGAAAACTGTTTCAACCAGAAAGCATTTGGAGAGAAACGGGAAAGACAAGGATTCCAAGTTTAGGTTGATTTTGGTGGAGAGCAGGATCCATCGC
CTGGCCCGGTATTACAAGAAGAAAAAGAAGCTTCCCCTTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MSRCPLFVVVYYSFVRVIASLVLRNGGRLLVSASKGVGLTLIPTAPQVSLARQKYRMLVRLRLMRLALEIPEDLYHLIKKTVSTRKHLERNGKDKDSKFRLILVESRIHR
LARYYKKKKKLPLVWK