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Spg032684 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032684
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold11:5877817..5884672
RNA-Seq ExpressionSpg032684
SyntenySpg032684
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0043229 - intracellular organelle (cellular component)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74312.1 hypothetical protein VITISV_037520 [Vitis vinifera]2.1e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
CAN75609.1 hypothetical protein VITISV_002943 [Vitis vinifera]2.1e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
RVW51134.1 SWI/SNF complex subunit SWI3C [Vitis vinifera]2.1e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
RVX13392.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.2e-0938.24Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+S L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R +  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV

Query:  GS
         S
Subjt:  GS
RVX16267.1 putative mitochondrial protein [Vitis vinifera]2.1e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
TrEMBL top hitse value%identityAlignment
A0A438ETN1 SWI/SNF complex subunit SWI3C1.0e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
A0A438JWQ2 Transposon TX1 uncharacterized 149 kDa protein6.0e-1038.24Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+S L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R +  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV

Query:  GS
         S
Subjt:  GS
A0A438K4Y9 Putative mitochondrial protein1.0e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
A5AFR7 Uncharacterized protein1.0e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
A5B978 Reverse transcriptase domain-containing protein1.0e-0938Show/hide
Query:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
        +K  ++ WN  VF ++ ++KK  L  + +ID +E++G+L+ +L  ER L+ KEL D+++KE+    QK ++ W++EGD N+ FFHR  +G   R Y  S+
Subjt:  VKECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEER-LKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein1.3e-0426.8Show/hide
Query:  KECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEERLKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHR----NVSGSLVRF
        K+C +  N++ F N+  K K+ L+ ++ I          S  + E +  K+        +    QK ++ WL++GD NT FFH+    N + +L++F
Subjt:  KECIRRWNKEVFHNVLDKKKDCLNRMKKIDMLEEQGSLSSQLKEERLKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHR----NVSGSLVRF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTCTTCGTGCTCCACCTTCACCTTCTTCTTCTCCTTTTCACGCATCTCCTCCTCCCTTTGAGAAGCTCATTGTCGCCACCGTCTCTCTCCGTTCAGTGCAGCCACCGCC
GTCTTTCTTCCGCTCGTGCCGCCGCATCCTCCCTCCTAGGGGGTTTGCACTGATTTTCTACTCTCTTGTTGTTACTGTCGAAGGAATCTATCGAATCATGGAGGACGAAG
TTCAGAATGATGTGAATGATCAGGTGGCAGATGGTGTGAAGGAGTGCATCCGCAGGTGGAATAAGGAGGTGTTTCACAATGTCTTAGATAAGAAAAAAGATTGCTTGAAT
CGGATGAAGAAGATTGATATGTTGGAAGAGCAAGGCAGCCTCAGTAGCCAGCTAAAGGAGGAGAGGCTGAAAACCAAAGAGTTGCTGGATATTATTGTGAAAGAGCAGAG
GATTATTAGCCAAAAATGCAAATTGAGTTGGCTGGAGGAAGGTGACAAGAACACAACTTTCTTTCATCGCAATGTCTCGGGTTCATTAGTGCGCTTCTATTCTGCATCAG
TTGGTAGCATTTTGTAG
mRNA sequenceShow/hide mRNA sequence
AGTCTTCGTGCTCCACCTTCACCTTCTTCTTCTCCTTTTCACGCATCTCCTCCTCCCTTTGAGAAGCTCATTGTCGCCACCGTCTCTCTCCGTTCAGTGCAGCCACCGCC
GTCTTTCTTCCGCTCGTGCCGCCGCATCCTCCCTCCTAGGGGGTTTGCACTGATTTTCTACTCTCTTGTTGTTACTGTCGAAGGAATCTATCGAATCATGGAGGACGAAG
TTCAGAATGATGTGAATGATCAGGTGGCAGATGGTGTGAAGGAGTGCATCCGCAGGTGGAATAAGGAGGTGTTTCACAATGTCTTAGATAAGAAAAAAGATTGCTTGAAT
CGGATGAAGAAGATTGATATGTTGGAAGAGCAAGGCAGCCTCAGTAGCCAGCTAAAGGAGGAGAGGCTGAAAACCAAAGAGTTGCTGGATATTATTGTGAAAGAGCAGAG
GATTATTAGCCAAAAATGCAAATTGAGTTGGCTGGAGGAAGGTGACAAGAACACAACTTTCTTTCATCGCAATGTCTCGGGTTCATTAGTGCGCTTCTATTCTGCATCAG
TTGGTAGCATTTTGTAG
Protein sequenceShow/hide protein sequence
SLRAPPSPSSSPFHASPPPFEKLIVATVSLRSVQPPPSFFRSCRRILPPRGFALIFYSLVVTVEGIYRIMEDEVQNDVNDQVADGVKECIRRWNKEVFHNVLDKKKDCLN
RMKKIDMLEEQGSLSSQLKEERLKTKELLDIIVKEQRIISQKCKLSWLEEGDKNTTFFHRNVSGSLVRFYSASVGSIL