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Spg032688 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032688
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:6680640..6693187
RNA-Seq ExpressionSpg032688
SyntenySpg032688
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-1252.08Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSA+SS + SS+  +                          EG    +  DDV WLHAIFR K AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.0e-1268.12Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        L TLSVLRDNDAVVEIELPVPDTLPTSA+S  + S ST        +  DDV WLHA+FR K AGGPGG
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1454.55Show/hide
Query:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        + ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSA+SS + SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-1252.08Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSA+SS + SS+  +                          EG    +  DDV WLHAIFR K AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1454.55Show/hide
Query:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        + ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSA+SS + SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.1e-1252.08Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSA+SS + SS+  +                          EG    +  DDV WLHAIFR K AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5A7VMG9 Reverse transcriptase9.2e-1554.55Show/hide
Query:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        + ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSA+SS + SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

A0A5D3BAD1 Retrotrans_gag domain-containing protein5.0e-1368.12Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        L TLSVLRDNDAVVEIELPVPDTLPTSA+S  + S ST        +  DDV WLHA+FR K AGGPGG
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5D3DR18 Gag/pol protein1.1e-1252.08Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        PL TLSVLRDNDAVVEIELP+PDTLPTSA+SS + SS+  +                          EG    +  DDV WLHAIFR K AGGPGG
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5D3DX39 Reverse transcriptase9.2e-1554.55Show/hide
Query:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG
        + ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSA+SS + SS+    + E   V +        EDDV WLHA+FR K AGGPGG
Subjt:  VVQVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSS---TFQEGQRVSL-------EEDDVRWLHAIFRTKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTGTCTTTCACACACCCGATAACATTCGATACACTGGTGATTGACGATGATTTGAAGAACAAGATCGCTCCATCGTTTTTCCTTCCTCCACCTTGTGTTCTCTC
GTTCTCTCTCTCGACTACAGTTTGTTGTCTTCTTCCTTTTACTTACTTCTCTCCTTCCGTTGTACCTTCTACCGTCGTTTCGGATCTTCACGGATCTGACCCTAACATGG
TTTCTTCCTTCGTTTTTCTTCAGATCCCACCCCATGCCGCTTCTCCTTGTCGCGACTGTCGACATCGGGATCCGCCTGGTAGGTGTTTGGAGCCAGAGGAGGGGTGGGAA
TACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCC
GTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCCAGAACAACCTCCAGTT
CAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGAAGCAGAGTAT
GCATTTAGGCATTTTGTAATGGGGACCGGTGGCCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGTCCCGTAAGGGGAAATGGTCGAAATGTAGGAAAATG
TTATAGTATGAGTAGGATGTTCGTAGGGTTCGTGCTTGGAACTATTGTAACGTACATCGTCCTGCATTATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTGTCTTTCACACACCCGATAACATTCGATACACTGGTGATTGACGATGATTTGAAGAACAAGATCGCTCCATCGTTTTTCCTTCCTCCACCTTGTGTTCTCTC
GTTCTCTCTCTCGACTACAGTTTGTTGTCTTCTTCCTTTTACTTACTTCTCTCCTTCCGTTGTACCTTCTACCGTCGTTTCGGATCTTCACGGATCTGACCCTAACATGG
TTTCTTCCTTCGTTTTTCTTCAGATCCCACCCCATGCCGCTTCTCCTTGTCGCGACTGTCGACATCGGGATCCGCCTGGTAGGTGTTTGGAGCCAGAGGAGGGGTGGGAA
TACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCTGGGTTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCC
GTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTAAAAGTTCCAGAACAACCTCCAGTT
CAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGAAGCAGAGTAT
GCATTTAGGCATTTTGTAATGGGGACCGGTGGCCGAGCGAACCTCATGGATGAACATGAAGCGTGTCGTAACCGTCCCGTAAGGGGAAATGGTCGAAATGTAGGAAAATG
TTATAGTATGAGTAGGATGTTCGTAGGGTTCGTGCTTGGAACTATTGTAACGTACATCGTCCTGCATTATCTTTAA
Protein sequenceShow/hide protein sequence
MAVSFTHPITFDTLVIDDDLKNKIAPSFFLPPPCVLSFSLSTTVCCLLPFTYFSPSVVPSTVVSDLHGSDPNMVSSFVFLQIPPHAASPCRDCRHRDPPGRCLEPEEGWE
YRAQDFRAKQEDLWFPLVFRAFWVVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAKSSRTTSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGEAEY
AFRHFVMGTGGRANLMDEHEACRNRPVRGNGRNVGKCYSMSRMFVGFVLGTIVTYIVLHYL