; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032753 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032753
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold11:8388992..8392653
RNA-Seq ExpressionSpg032753
SyntenySpg032753
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026133.1 hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa]6.7e-2647.57Show/hide
Query:  NSNQGRPPGRPPPLQLPPQP---NPQTASSSGASSSRGKRPM---SAPSPMTADNY-AMDLSFETVTRRRQGSSPRALSIRSDASLPPQPSTTLLRPSGV
        NS + RP GRPPP   P QP   NPQ ASS  A+SS+ KRP+   SA +PM A+NY AMDLS +  +R +     + L +                    
Subjt:  NSNQGRPPGRPPPLQLPPQP---NPQTASSSGASSSRGKRPM---SAPSPMTADNY-AMDLSFETVTRRRQGSSPRALSIRSDASLPPQPSTTLLRPSGV

Query:  SNPNVRPLGPSQSWFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDP
        S+ N   +     WFK NAHLS EEEDQFLL KNS+MT++ GA SEADLQAVM+ VV   +++DD ++D PE     S SSVNDI+ E +PY NFD  DP
Subjt:  SNPNVRPLGPSQSWFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDP

Query:  YYDSQP
        Y +SQP
Subjt:  YYDSQP

KAA0050626.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.7e-1865.59Show/hide
Query:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPEAEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG
        WFK NA LS EEEDQFLLAKNSIMTS+AGA SEADLQAVM+ VV   SD D+ Q+D  +    S+SSVNDI+   DPY NFD  D Y DSQ G
Subjt:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPEAEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG

KAA0051819.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.7e-1964.89Show/hide
Query:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG
        WFK NA L  EEEDQFLLAKNSIMTS+AGA SEADLQA+M+ VV  I   DD +ED+PE    +S+SSVN+I+ + D Y NFD  DPY DSQPG
Subjt:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG

KAA0066358.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.7e-1935.22Show/hide
Query:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN-------------------------VRP------------------
        M+A NYAMDL FE V+RRRQGS+ R L+++SD +SLPP PST LLRPS  + PN                         VRP                  
Subjt:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN-------------------------VRP------------------

Query:  ----------------LGPS----------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTI
                        LGPS                            + WFKAN HL   + +E++ FLL KN++M++LAGA+++ +  +V+ NVV  +
Subjt:  ----------------LGPS----------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTI

Query:  S-DNDDIQEDNPEAEAASESSVNDIED-EYDPYLNFDPLDPYYDSQP
        S DNDD+ ED      AS +SVND++D +Y+PY   D  DP+ D QP
Subjt:  S-DNDDIQEDNPEAEAASESSVNDIED-EYDPYLNFDPLDPYYDSQP

TYJ96700.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.1e-1937.22Show/hide
Query:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN----VRP-------------------------------LGPS----
        M+A+NYAMDL FE V+RRRQG + R L+I+SD +SLPP PST LL PSG + PN     RP                               LGPS    
Subjt:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN----VRP-------------------------------LGPS----

Query:  ------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQN-VVQTISDNDDIQEDNPEAEAASESSVND
                                + WFKAN HL   + +E++  L+ KN++M++LAGA+++ +   V+ N VV  + DNDD+ ED      AS + VND
Subjt:  ------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQN-VVQTISDNDDIQEDNPEAEAASESSVND

Query:  IED-EYDPYLNFDPLDPYYDSQP
        ++D +YDPY   D  DP  D+QP
Subjt:  IED-EYDPYLNFDPLDPYYDSQP

TrEMBL top hitse value%identityAlignment
A0A5A7U8X4 Retrotransposable element Tf23.2e-1865.59Show/hide
Query:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPEAEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG
        WFK NA LS EEEDQFLLAKNSIMTS+AGA SEADLQAVM+ VV   SD D+ Q+D  +    S+SSVNDI+   DPY NFD  D Y DSQ G
Subjt:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPEAEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG

A0A5A7UEA0 Retrotransposable element Tf21.3e-1964.89Show/hide
Query:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG
        WFK NA L  EEEDQFLLAKNSIMTS+AGA SEADLQA+M+ VV  I   DD +ED+PE    +S+SSVN+I+ + D Y NFD  DPY DSQPG
Subjt:  WFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDPYYDSQPG

A0A5A7VF67 Retrotransposable element Tf21.3e-1935.22Show/hide
Query:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN-------------------------VRP------------------
        M+A NYAMDL FE V+RRRQGS+ R L+++SD +SLPP PST LLRPS  + PN                         VRP                  
Subjt:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN-------------------------VRP------------------

Query:  ----------------LGPS----------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTI
                        LGPS                            + WFKAN HL   + +E++ FLL KN++M++LAGA+++ +  +V+ NVV  +
Subjt:  ----------------LGPS----------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTI

Query:  S-DNDDIQEDNPEAEAASESSVNDIED-EYDPYLNFDPLDPYYDSQP
        S DNDD+ ED      AS +SVND++D +Y+PY   D  DP+ D QP
Subjt:  S-DNDDIQEDNPEAEAASESSVNDIED-EYDPYLNFDPLDPYYDSQP

A0A5D3BA13 Retrotransposable element Tf21.0e-1937.22Show/hide
Query:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN----VRP-------------------------------LGPS----
        M+A+NYAMDL FE V+RRRQG + R L+I+SD +SLPP PST LL PSG + PN     RP                               LGPS    
Subjt:  MTADNYAMDLSFETVTRRRQGSSPRALSIRSD-ASLPPQPSTTLLRPSGVSNPN----VRP-------------------------------LGPS----

Query:  ------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQN-VVQTISDNDDIQEDNPEAEAASESSVND
                                + WFKAN HL   + +E++  L+ KN++M++LAGA+++ +   V+ N VV  + DNDD+ ED      AS + VND
Subjt:  ------------------------QSWFKANAHL---SCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQN-VVQTISDNDDIQEDNPEAEAASESSVND

Query:  IED-EYDPYLNFDPLDPYYDSQP
        ++D +YDPY   D  DP  D+QP
Subjt:  IED-EYDPYLNFDPLDPYYDSQP

A0A5D3CI63 Uncharacterized protein3.2e-2647.57Show/hide
Query:  NSNQGRPPGRPPPLQLPPQP---NPQTASSSGASSSRGKRPM---SAPSPMTADNY-AMDLSFETVTRRRQGSSPRALSIRSDASLPPQPSTTLLRPSGV
        NS + RP GRPPP   P QP   NPQ ASS  A+SS+ KRP+   SA +PM A+NY AMDLS +  +R +     + L +                    
Subjt:  NSNQGRPPGRPPPLQLPPQP---NPQTASSSGASSSRGKRPM---SAPSPMTADNY-AMDLSFETVTRRRQGSSPRALSIRSDASLPPQPSTTLLRPSGV

Query:  SNPNVRPLGPSQSWFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDP
        S+ N   +     WFK NAHLS EEEDQFLL KNS+MT++ GA SEADLQAVM+ VV   +++DD ++D PE     S SSVNDI+ E +PY NFD  DP
Subjt:  SNPNVRPLGPSQSWFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPE-AEAASESSVNDIEDEYDPYLNFDPLDP

Query:  YYDSQP
        Y +SQP
Subjt:  YYDSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTCGAAGCCCCGAGCAGACTTACAAGGACCCTTTAAACTTTGGTTATCACCAAGTGATGAATCAGTTGAAGGAAGATCATTCAACTCCAATCAAGGAAGGCCTCC
TGGAAGGCCTCCACCTCTACAGCTGCCTCCGCAGCCAAACCCTCAAACAGCTAGTTCTTCCGGAGCTAGTTCATCAAGGGGCAAACGCCCTATGTCTGCACCATCTCCTA
TGACTGCAGACAATTACGCCATGGATCTCAGTTTTGAGACTGTGACCAGAAGGCGTCAAGGCTCCTCTCCAAGGGCCTTATCAATTAGATCGGATGCGAGTCTTCCACCG
CAGCCATCTACCACTTTGTTACGTCCTTCCGGCGTATCAAATCCAAATGTCCGACCTCTCGGACCTTCTCAATCATGGTTTAAAGCAAATGCGCATTTATCTTGCGAAGA
AGAAGACCAGTTCCTTCTCGCCAAGAACTCAATTATGACGTCTCTGGCCGGTGCAACCTCCGAGGCCGACCTCCAAGCCGTCATGCAAAATGTCGTCCAAACCATTTCCG
ACAACGACGACATCCAAGAAGATAATCCTGAAGCAGAAGCAGCTTCAGAATCATCTGTCAACGATATCGAAGACGAATATGATCCATATTTGAACTTCGATCCTTTAGAT
CCTTACTATGATTCCCAGCCAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATCTCGAAGCCCCGAGCAGACTTACAAGGACCCTTTAAACTTTGGTTATCACCAAGTGATGAATCAGTTGAAGGAAGATCATTCAACTCCAATCAAGGAAGGCCTCC
TGGAAGGCCTCCACCTCTACAGCTGCCTCCGCAGCCAAACCCTCAAACAGCTAGTTCTTCCGGAGCTAGTTCATCAAGGGGCAAACGCCCTATGTCTGCACCATCTCCTA
TGACTGCAGACAATTACGCCATGGATCTCAGTTTTGAGACTGTGACCAGAAGGCGTCAAGGCTCCTCTCCAAGGGCCTTATCAATTAGATCGGATGCGAGTCTTCCACCG
CAGCCATCTACCACTTTGTTACGTCCTTCCGGCGTATCAAATCCAAATGTCCGACCTCTCGGACCTTCTCAATCATGGTTTAAAGCAAATGCGCATTTATCTTGCGAAGA
AGAAGACCAGTTCCTTCTCGCCAAGAACTCAATTATGACGTCTCTGGCCGGTGCAACCTCCGAGGCCGACCTCCAAGCCGTCATGCAAAATGTCGTCCAAACCATTTCCG
ACAACGACGACATCCAAGAAGATAATCCTGAAGCAGAAGCAGCTTCAGAATCATCTGTCAACGATATCGAAGACGAATATGATCCATATTTGAACTTCGATCCTTTAGAT
CCTTACTATGATTCCCAGCCAGGATGA
Protein sequenceShow/hide protein sequence
MISKPRADLQGPFKLWLSPSDESVEGRSFNSNQGRPPGRPPPLQLPPQPNPQTASSSGASSSRGKRPMSAPSPMTADNYAMDLSFETVTRRRQGSSPRALSIRSDASLPP
QPSTTLLRPSGVSNPNVRPLGPSQSWFKANAHLSCEEEDQFLLAKNSIMTSLAGATSEADLQAVMQNVVQTISDNDDIQEDNPEAEAASESSVNDIEDEYDPYLNFDPLD
PYYDSQPG