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Spg032769 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032769
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:9319672..9327730
RNA-Seq ExpressionSpg032769
SyntenySpg032769
Gene Ontology termsGO:0071704 - organic substance metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-1336.88Show/hide
Query:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNRVSED
        AQW+PP    WKLN +A+W   TN+GG+GW +RD +G +I A C+ I     I YLE   I EGL    +I +   R   I +ESDS + ++ L+R  +D
Subjt:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNRVSED

Query:  LSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA
         +E+  ++ EI +  + +   +     R +N +A+ LAR A
Subjt:  LSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]1.9e-1134.23Show/hide
Query:  KSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVN
        + + LP    W PP    WKLNVDA+W    ++GGLGW +RD EG  I A C                 L+ L   L+++       KI +ESD  +VVN
Subjt:  KSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVN

Query:  ALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA
         +N+ S  L+E+  IV +I ++ E +    F   P ++N +A+ +AR A
Subjt:  ALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]2.7e-1040.82Show/hide
Query:  SHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNR
        + A+W+PP    WKLN DA+W   TN+ G+GW +RD +G +I  GC+ I     I YLE   I EGL    +I +   R   I +ESDS + ++ L+R
Subjt:  SHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.6e-1836.14Show/hide
Query:  SPTQIPSKSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVES
        S T +    + L +  +WEPP    W LN DASWS  T+ GG+GW IR ++G ++ AG + ++    +K LEA+ ILEGL N  ++         + +E+
Subjt:  SPTQIPSKSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVES

Query:  DSSDVVNALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLA-RAASSKGDFVWI
        DS++V + LNR  EDL++   +V EI    +     AFAK  R +N  A+ LA RA+  +   +W+
Subjt:  DSSDVVNALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLA-RAASSKGDFVWI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.1e-1436.99Show/hide
Query:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGL-----DNYLSIDENWRRRFKIVVESDSSDVVNALN
        A+W+PP    WKLN DA+W   TN+GG+GW +RD +G +I A C+ I     I YLE   I EGL     ++   I +   R   I +ESDS + ++ L+
Subjt:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGL-----DNYLSIDENWRRRFKIVVESDSSDVVNALN

Query:  RVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA
        R  +D +E+  ++ EI +  E +   +     R +N +A+DLAR A
Subjt:  RVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.3e-1436.88Show/hide
Query:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNRVSED
        AQW+PP    WKLN +A+W   TN+GG+GW +RD +G +I A C+ I     I YLE   I EGL    +I +   R   I +ESDS + ++ L+R  +D
Subjt:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNRVSED

Query:  LSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA
         +E+  ++ EI +  + +   +     R +N +A+ LAR A
Subjt:  LSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA

A0A6J1D4B6 uncharacterized protein LOC1110171819.0e-1234.23Show/hide
Query:  KSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVN
        + + LP    W PP    WKLNVDA+W    ++GGLGW +RD EG  I A C                 L+ L   L+++       KI +ESD  +VVN
Subjt:  KSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVN

Query:  ALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA
         +N+ S  L+E+  IV +I ++ E +    F   P ++N +A+ +AR A
Subjt:  ALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.3e-1040.82Show/hide
Query:  SHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNR
        + A+W+PP    WKLN DA+W   TN+ G+GW +RD +G +I  GC+ I     I YLE   I EGL    +I +   R   I +ESDS + ++ L+R
Subjt:  SHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNR

A0A6J1DNV9 uncharacterized protein LOC1110224032.2e-1836.14Show/hide
Query:  SPTQIPSKSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVES
        S T +    + L +  +WEPP    W LN DASWS  T+ GG+GW IR ++G ++ AG + ++    +K LEA+ ILEGL N  ++         + +E+
Subjt:  SPTQIPSKSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVES

Query:  DSSDVVNALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLA-RAASSKGDFVWI
        DS++V + LNR  EDL++   +V EI    +     AFAK  R +N  A+ LA RA+  +   +W+
Subjt:  DSSDVVNALNRVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLA-RAASSKGDFVWI

A0A6J1DSV1 uncharacterized protein LOC1110236085.1e-1536.99Show/hide
Query:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGL-----DNYLSIDENWRRRFKIVVESDSSDVVNALN
        A+W+PP    WKLN DA+W   TN+GG+GW +RD +G +I A C+ I     I YLE   I EGL     ++   I +   R   I +ESDS + ++ L+
Subjt:  AQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGL-----DNYLSIDENWRRRFKIVVESDSSDVVNALN

Query:  RVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA
        R  +D +E+  ++ EI +  E +   +     R +N +A+DLAR A
Subjt:  RVSEDLSEMEGIVNEIREKGERVS-TAFAKCPRRSNSLANDLARAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0422.38Show/hide
Query:  HAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNRVSE
        + +W PP  +  K N DAS   +    GLGW +R+ +G++I  G  +       +  E +T++  +              K++ E D+  +   +N  S 
Subjt:  HAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALNRVSE

Query:  D--LSEMEGIVNEIREKGERVSTAFAKCPRRSNSLANDLARAA
        +  L      +       E +  +F    R  N  A+ LA+ A
Subjt:  D--LSEMEGIVNEIREKGERVSTAFAKCPRRSNSLANDLARAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTGGGGGTATCCTATGCAATGAATTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTACATGGGTGAGAGTGGCCAATACGCC
GACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGGAGAAGTAGATGAGTGTC
CATTAGGTCCCCCTGCTAGCTCATCAAATGGTGGTGTCCCAATTGTTGACGCTTTGTCCAAAATCAAGAAAGGCGTTGTTGAAGTATTCAGAGTCGTCAACGTCGGATTG
TCGCCGACGCAGATTCCCTCTAAATCGGAGAAACTCCCAAGTCACGCCCAATGGGAGCCGCCGGAGCCGGAGTGCTGGAAGTTAAACGTCGACGCATCCTGGAGCGGAAA
GACGAATTCAGGTGGCTTGGGATGGGCCATTCGTGACTTTGAAGGATCTCTGATAGGCGCGGGCTGCAAACGGATAGACAAAAACTGGCCGATCAAGTATTTGGAGGCCA
CAACAATTCTTGAGGGTTTAGATAATTACCTGAGCATAGACGAGAATTGGAGGAGGAGATTCAAAATTGTTGTTGAATCAGACTCCAGTGACGTCGTCAATGCCCTGAAT
CGAGTATCGGAGGACCTGTCGGAGATGGAAGGGATCGTGAACGAGATTAGGGAGAAAGGGGAGAGGGTTTCGACCGCTTTCGCTAAATGCCCCCGCCGGTCAAACTCCCT
GGCCAACGATCTCGCCCGAGCAGCTTCATCGAAGGGAGATTTTGTGTGGATTAGCCGTCGATCTCCCCCGTCTGTTGAGGGAGATGAGTCCTCCAAACCGGACGAAAACC
GCTCCAAACGTGCCAAAACCGCCCAAACCAAGTCAAAACTGCCAAAAATTGGCTCAAACCCGCTTGAACCAGCTGGAAAACAACTGAACCAGTCAAAAACCGCTGCCCAG
TCAACGAACCGGTCAAAAAACCACCTGGAATTGACCGAACCGCGCCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTGGGGGTATCCTATGCAATGAATTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTACATGGGTGAGAGTGGCCAATACGCC
GACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACATCTAGGAGAAGTAGATGAGTGTC
CATTAGGTCCCCCTGCTAGCTCATCAAATGGTGGTGTCCCAATTGTTGACGCTTTGTCCAAAATCAAGAAAGGCGTTGTTGAAGTATTCAGAGTCGTCAACGTCGGATTG
TCGCCGACGCAGATTCCCTCTAAATCGGAGAAACTCCCAAGTCACGCCCAATGGGAGCCGCCGGAGCCGGAGTGCTGGAAGTTAAACGTCGACGCATCCTGGAGCGGAAA
GACGAATTCAGGTGGCTTGGGATGGGCCATTCGTGACTTTGAAGGATCTCTGATAGGCGCGGGCTGCAAACGGATAGACAAAAACTGGCCGATCAAGTATTTGGAGGCCA
CAACAATTCTTGAGGGTTTAGATAATTACCTGAGCATAGACGAGAATTGGAGGAGGAGATTCAAAATTGTTGTTGAATCAGACTCCAGTGACGTCGTCAATGCCCTGAAT
CGAGTATCGGAGGACCTGTCGGAGATGGAAGGGATCGTGAACGAGATTAGGGAGAAAGGGGAGAGGGTTTCGACCGCTTTCGCTAAATGCCCCCGCCGGTCAAACTCCCT
GGCCAACGATCTCGCCCGAGCAGCTTCATCGAAGGGAGATTTTGTGTGGATTAGCCGTCGATCTCCCCCGTCTGTTGAGGGAGATGAGTCCTCCAAACCGGACGAAAACC
GCTCCAAACGTGCCAAAACCGCCCAAACCAAGTCAAAACTGCCAAAAATTGGCTCAAACCCGCTTGAACCAGCTGGAAAACAACTGAACCAGTCAAAAACCGCTGCCCAG
TCAACGAACCGGTCAAAAAACCACCTGGAATTGACCGAACCGCGCCCCTGA
Protein sequenceShow/hide protein sequence
MRVGVSYAMNLHKTGPRNSKPLDVTPLTTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPHLGEVDECPLGPPASSSNGGVPIVDALSKIKKGVVEVFRVVNVGL
SPTQIPSKSEKLPSHAQWEPPEPECWKLNVDASWSGKTNSGGLGWAIRDFEGSLIGAGCKRIDKNWPIKYLEATTILEGLDNYLSIDENWRRRFKIVVESDSSDVVNALN
RVSEDLSEMEGIVNEIREKGERVSTAFAKCPRRSNSLANDLARAASSKGDFVWISRRSPPSVEGDESSKPDENRSKRAKTAQTKSKLPKIGSNPLEPAGKQLNQSKTAAQ
STNRSKNHLELTEPRP