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Spg032771 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032771
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:6883799..6884786
RNA-Seq ExpressionSpg032771
SyntenySpg032771
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016649695.1 PREDICTED: uncharacterized protein LOC107881115 [Prunus mume]1.0e-0632.52Show/hide
Query:  SFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLT-HGEQIPGVDFPQELVTGCLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDA
        SF + W  +   S+  E++L    CW IWND+N L   G  +  V    + +     F  Y KINVD A   +    G+GV+ RN N E +AA +  +  
Subjt:  SFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLT-HGEQIPGVDFPQELVTGCLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDA

Query:  NIGAPLFALRAIYEGMVFAKSMG
        +     F+ +A  EG+ FA  +G
Subjt:  NIGAPLFALRAIYEGMVFAKSMG

XP_022155289.1 uncharacterized protein LOC111022426 [Momordica charantia]7.5e-1030.12Show/hide
Query:  VPINGNLEDK---LVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYW------
        +P+  NL+ K   + +IWR       L   FN  + +RW     N + + + L  +TCW++WND N L + ++IP     +      +P V+ W      
Subjt:  VPINGNLEDK---LVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYW------

Query:  ---KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDAN-IGAPLFA-LRAIYEGMVFAKSMG
           K+N DAA   S   +G+GV+ R+ N E +AA    +D + +  PL   + AI EG+  A  +G
Subjt:  ---KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDAN-IGAPLFA-LRAIYEGMVFAKSMG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.4e-1030.91Show/hide
Query:  KIWRKTFN-RVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCL--------------------PFVDYW
        +IWR  F     L  E N SF + W  +       ++ L  +T W IWND+N L HG+Q+  V+F  E +T  L                    P V YW
Subjt:  KIWRKTFN-RVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCL--------------------PFVDYW

Query:  --------KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA
                K+N DAA   +  +T  G I R+S+   +AA++I +   +   L  +R I EG+ FA
Subjt:  --------KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA

XP_023874626.1 uncharacterized protein LOC111987155 [Quercus suber]7.7e-0726.95Show/hide
Query:  IWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGV--------DFPQEL--------------VTGC---LPFV
        +WR T  ++ +    +R F D   +I       +  +  VT WS+WN++N LT G Q  G         ++ +E+              +  C    P  
Subjt:  IWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGV--------DFPQEL--------------VTGC---LPFV

Query:  DYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMGCSK
         ++KIN D A    + + GIGV+ RN  G  + A +  +D  +GA     RA+ EG+  A  +G  K
Subjt:  DYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMGCSK

XP_023884264.1 uncharacterized protein LOC111996510 [Quercus suber]1.6e-0732.58Show/hide
Query:  RSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTH-GEQIPGVDFPQELVTG---------CLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEA
        +SF D  L I S++T  ++E+     W++W +KNRL H G  +P +  P  ++T           LP     KINVD A   S  ++ IGV+ R+S G+ 
Subjt:  RSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTH-GEQIPGVDFPQELVTG---------CLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEA

Query:  IAASTISLDANIGAPLFALRAIYEGMVFAKSM
        +AA    L A   A L  + A+ +G++ A+ +
Subjt:  IAASTISLDANIGAPLFALRAIYEGMVFAKSM

TrEMBL top hitse value%identityAlignment
A0A0Q3GGJ7 RNase H domain-containing protein5.4e-0630.95Show/hide
Query:  ELVVVTCWSIWNDKNRLTHGEQIPGVDFP----QELVTGCL----------------PFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLD
        EL  V CW IW ++ +L HGE IP  D      Q LV   +                P     K+NVDA++I        G + R+++G  + AS   + 
Subjt:  ELVVVTCWSIWNDKNRLTHGEQIPGVDFP----QELVTGCL----------------PFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLD

Query:  ANIGAPLFALRAIYEGMVFAKSMGCS
            A +    A++ G+ FAKS+GCS
Subjt:  ANIGAPLFALRAIYEGMVFAKSMGCS

A0A5E4FZN9 PREDICTED: retrotransposon1.4e-0628.9Show/hide
Query:  KIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKN----------------RLT----------------HGEQIPGVDFPQEL
        ++WR +      +E    SF + W  +  +S+  E  L    CW +WN +N                R+T                HG Q      PQ  
Subjt:  KIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKN----------------RLT----------------HGEQIPGVDFPQEL

Query:  VTGCL-PFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMG
        + G   P    +KINVD A        G+GV+ RN+NGE +AA    + A+ GA    L A  EG+ FA  MG
Subjt:  VTGCL-PFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMG

A0A6J1DPU1 uncharacterized protein LOC1110224263.6e-1030.12Show/hide
Query:  VPINGNLEDK---LVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYW------
        +P+  NL+ K   + +IWR       L   FN  + +RW     N + + + L  +TCW++WND N L + ++IP     +      +P V+ W      
Subjt:  VPINGNLEDK---LVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCLPFVDYW------

Query:  ---KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDAN-IGAPLFA-LRAIYEGMVFAKSMG
           K+N DAA   S   +G+GV+ R+ N E +AA    +D + +  PL   + AI EG+  A  +G
Subjt:  ---KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDAN-IGAPLFA-LRAIYEGMVFAKSMG

A0A6J1DX30 uncharacterized protein LOC1110248742.1e-1030.91Show/hide
Query:  KIWRKTFN-RVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCL--------------------PFVDYW
        +IWR  F     L  E N SF + W  +       ++ L  +T W IWND+N L HG+Q+  V+F  E +T  L                    P V YW
Subjt:  KIWRKTFN-RVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGVDFPQELVTGCL--------------------PFVDYW

Query:  --------KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA
                K+N DAA   +  +T  G I R+S+   +AA++I +   +   L  +R I EG+ FA
Subjt:  --------KINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA

A0A803NGI9 Uncharacterized protein6.4e-0728.48Show/hide
Query:  KIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGV--------------DFPQELV--------TGCL-----
        K+WR     +  D     SFAD  + + +  + +EME ++ T W +WND+N   HG+  PG+              +F Q+          TG       
Subjt:  KIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQIPGV--------------DFPQELV--------TGCL-----

Query:  --PFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA
          P +D  K+NVDAA   S    G+G+I RNS+G+ +AA +  L   +       +A+  G+ +A
Subjt:  --PFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTGTCTTTGCAAATGATAAGGTTGTTGATTTCATATCTCCTTCTGAGGATTGGAACTTAGAGAGGCTTAGCAGAACAGTGACTAGGGATGACTTTGAAGCTAT
TAGAAGGGTCCCCATCAATGGAAATCTAGAAGATAAGCTAGTGAAAATCTGGAGGAAGACCTTCAATCGAGTGTTCTTGGATGAAGAATTTAATAGAAGCTTTGCGGATC
GTTGGCTGAAGATTGATTCGAACTCTACTATGGCGGAGATGGAGCTGGTGGTTGTGACATGTTGGTCAATCTGGAACGACAAAAATAGATTAACTCATGGAGAACAAATC
CCTGGTGTAGACTTTCCTCAAGAGTTGGTAACTGGGTGCCTCCCCTTTGTGGATTATTGGAAAATTAACGTCGATGCGGCCTGGATTCCATCAATTCCGACGACTGGTAT
AGGGGTGATTTTCAGAAACTCCAACGGTGAAGCTATAGCGGCATCTACGATTTCTCTGGATGCTAACATTGGGGCTCCTCTTTTCGCATTAAGGGCTATTTACGAAGGGA
TGGTTTTTGCCAAGTCTATGGGTTGCTCCAAATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATACTGTCTTTGCAAATGATAAGGTTGTTGATTTCATATCTCCTTCTGAGGATTGGAACTTAGAGAGGCTTAGCAGAACAGTGACTAGGGATGACTTTGAAGCTAT
TAGAAGGGTCCCCATCAATGGAAATCTAGAAGATAAGCTAGTGAAAATCTGGAGGAAGACCTTCAATCGAGTGTTCTTGGATGAAGAATTTAATAGAAGCTTTGCGGATC
GTTGGCTGAAGATTGATTCGAACTCTACTATGGCGGAGATGGAGCTGGTGGTTGTGACATGTTGGTCAATCTGGAACGACAAAAATAGATTAACTCATGGAGAACAAATC
CCTGGTGTAGACTTTCCTCAAGAGTTGGTAACTGGGTGCCTCCCCTTTGTGGATTATTGGAAAATTAACGTCGATGCGGCCTGGATTCCATCAATTCCGACGACTGGTAT
AGGGGTGATTTTCAGAAACTCCAACGGTGAAGCTATAGCGGCATCTACGATTTCTCTGGATGCTAACATTGGGGCTCCTCTTTTCGCATTAAGGGCTATTTACGAAGGGA
TGGTTTTTGCCAAGTCTATGGGTTGCTCCAAATGGTAG
Protein sequenceShow/hide protein sequence
MDTVFANDKVVDFISPSEDWNLERLSRTVTRDDFEAIRRVPINGNLEDKLVKIWRKTFNRVFLDEEFNRSFADRWLKIDSNSTMAEMELVVVTCWSIWNDKNRLTHGEQI
PGVDFPQELVTGCLPFVDYWKINVDAAWIPSIPTTGIGVIFRNSNGEAIAASTISLDANIGAPLFALRAIYEGMVFAKSMGCSKW