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Spg032797 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032797
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description30S ribosomal protein S16
Genome locationscaffold11:5902466..5907653
RNA-Seq ExpressionSpg032797
SyntenySpg032797
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5561755.1 hypothetical protein DKX38_006712 [Salix brachista]4.3e-1591.3Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        MVVRIRLSRFGCNNKPFYRVM  DSRSPRD KHLEVLGYYNPLPG+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

KAF3775373.1 28S ribosomal protein S16 [Nymphaea thermarum]4.3e-1586.96Show/hide
Query:  MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNPFPGK
        MVVRIRLSRFGC N+PFYR MAADSRCPRD KHLEVLGYYNP PG+
Subjt:  MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNPFPGK

KAG5248289.1 28S ribosomal protein [Salix suchowensis]4.3e-1591.3Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        MVVRIRLSRFGCNNKPFYRVM  DSRSPRD KHLEVLGYYNPLPG+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

KAG8481876.1 hypothetical protein CXB51_027228 [Gossypium anomalum]4.3e-2345.83Show/hide
Query:  MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNPFP----GKFLCLFIMGLMIPASLLCCSSKMVVRIRLSRFGCNNKPFYRVMTADSRSPR
        MVVRIRLSRFGC NKPFYR MAA+SR PRD KHLEVLGYYNP P    GK + L    +    S+    S+ V RI L R G    P   V       PR
Subjt:  MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNPFP----GKFLCLFIMGLMIPASLLCCSSKMVVRIRLSRFGCNNKPFYRVMTADSRSPR

Query:  DDKRLE-----VLGYYNPLPGKFLCL----FIMGLMIPASFSKMVVRIRLSRFG----CNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPG
        D + ++     VL    P+ G          +       + SK  +   L + G      NK FYRVM  +SRSPRD KHLEVLGYYNPL G
Subjt:  DDKRLE-----VLGYYNPLPGKFLCL----FIMGLMIPASFSKMVVRIRLSRFG----CNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPG

RYR78785.1 hypothetical protein Ahy_A01g003641 isoform D [Arachis hypogaea]3.3e-1578.18Show/hide
Query:  LMIPASFSKMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        L+      KMVVRIRLSRFGC NKPFYRVM  DSRSPRD KHLEVLGYYNPLPG+
Subjt:  LMIPASFSKMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

TrEMBL top hitse value%identityAlignment
A0A0K9QJ74 Uncharacterized protein (Fragment)3.6e-1587.23Show/hide
Query:  KMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        KMVVRIRLSRFGC NKPFYRVM  DSRSPRD KH+EVLGYYNPLPG+
Subjt:  KMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

A0A2H5MXS6 Uncharacterized protein2.7e-1578.57Show/hide
Query:  PASLLCCSSKMVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPLPGK
        PAS      KMVVRIRL+RFGC NKPFYRVM ADSRSPRD K LEVLGYYNPLPG+
Subjt:  PASLLCCSSKMVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPLPGK

A0A445ETH1 Uncharacterized protein1.6e-1578.18Show/hide
Query:  LMIPASFSKMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        L+      KMVVRIRLSRFGC NKPFYRVM  DSRSPRD KHLEVLGYYNPLPG+
Subjt:  LMIPASFSKMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

A0A5N5N2I9 Uncharacterized protein2.1e-1591.3Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        MVVRIRLSRFGCNNKPFYRVM  DSRSPRD KHLEVLGYYNPLPG+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

A0A6N2KI31 Uncharacterized protein2.1e-1591.3Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        MVVRIRLSRFGCNNKPFYRVM  DSRSPRD KHLEVLGYYNPLPG+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

SwissProt top hitse value%identityAlignment
A4XLF4 30S ribosomal protein S169.7e-1065.12Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPL
        M VRIRL R G  N PFYR++ ADSRSPRD K ++ +GYYNPL
Subjt:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPL

B0S044 30S ribosomal protein S161.7e-0964.29Show/hide
Query:  MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNP
        M V+IRL R G   KPFYR + ADSRCPRD K +E +GYYNP
Subjt:  MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNP

O65686 30S ribosomal protein S16-1, chloroplastic3.3e-1060.87Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPLPGK
        M V+IRL+R GC ++PFYRV+ AD +S RD K++EVLG+Y+PL GK
Subjt:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPLPGK

Q18BB8 30S ribosomal protein S161.7e-0962.79Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPL
        M V+IRL R G N KPFYR++ ADSR+PRD K +E +GYYNP+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial5.3e-1682.61Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        MVVRIRLSRFGC N+PF+RVM  DSRSPRD KHLEVLGY+NPLPG+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 162.4e-1160.87Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPLPGK
        M V+IRL+R GC ++PFYRV+ AD +S RD K++EVLG+Y+PL GK
Subjt:  MVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPLPGK

AT5G56940.1 Ribosomal protein S16 family protein3.8e-1782.61Show/hide
Query:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK
        MVVRIRLSRFGC N+PF+RVM  DSRSPRD KHLEVLGY+NPLPG+
Subjt:  MVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGTTGTAATAACAAGCCGTTTTACAGGTTCATGGCGGCCGATAGTAGATGTCCTAGAGACGACAAGCATCTCGAGGTTCT
TGGTTACTATAATCCCTTCCCAGGTAAATTTCTTTGTTTGTTTATTATGGGATTGATGATTCCTGCTAGTTTGCTTTGTTGCAGCTCGAAAATGGTGGTGAGAATTCGAT
TGTCGAGGTTTGGTTGTAATAACAAGCCATTTTATAGGGTCATGACGGCCGATAGTAGATCTCCTAGAGACGACAAGCGTCTCGAGGTTCTTGGTTACTATAATCCCCTC
CCAGGTAAATTTCTTTGTTTGTTTATTATGGGATTGATGATTCCTGCTAGTTTCTCGAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGTTGTAATAACAAGCCGTT
TTACAGGGTCATGACGACCGATAGTAGATCTCCTAGAGACGACAAGCATCTTGAGGTTCTTGGTTACTATAATCCCCTCCCAGGTAAATTTCTTTGTTTGTTTATTATGG
GATTGATGATTCCTCCTAGTTTGCTTTGTTTTGGTGGGATATGGAATGAGAGTGAAAAGGAGTACGAAGGTGGGGAGTTGAGAGGGTTCGATGTAGATGTTGGAATTACA
CATGTCGACTTCCTAGGCCGGGTTTATCGAATAAGTTGTATAAATCCCGCCGAGTTTGATCTTGTGATAAGGTCACTTCCCATTCCATTCACGGTATCAAATAACCTCAA
TCAATGTAATCCTTCCTCATCCTTCCCATATAACCAAGGACAATATATCCCCTCCACAAACATCTCTAACCAAGGACAAAGTGCAGTAGCATCACTTACTCCAATGTCCA
ATAATGTATCTGCATATAACTTGGGAGATGATGTAGACCATTCTTGGGGGGAATTGAGAGATGAAGGGTTGGAAGTAGATGAAGATGATGACTGGAGTGTGGATAGAGAC
GATGAGTCAAATGTAGATGTAGATTACGATGAGGATAGAGATGATGGACTTGTTGAGCCAGAGGCAGATGGATATGGTCATAGGGAGGCCCCGCCTGCTAATGTAACTGA
AGCTCCACCTGCTAATGCATCTGAAGCTCCACCTGTTAATGCACCTGAGGCTATGCATGCATCAGTTTCGGTCGTCCCACGAACTTCTGTGACAGCTCCATCAGGTTATG
CTGCAAAGAATGTGGAAAGTGGAGTAATGAAGCTGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGAGAATTCGATTGTCGAGGTTTGGTTGTAATAACAAGCCGTTTTACAGGTTCATGGCGGCCGATAGTAGATGTCCTAGAGACGACAAGCATCTCGAGGTTCT
TGGTTACTATAATCCCTTCCCAGGTAAATTTCTTTGTTTGTTTATTATGGGATTGATGATTCCTGCTAGTTTGCTTTGTTGCAGCTCGAAAATGGTGGTGAGAATTCGAT
TGTCGAGGTTTGGTTGTAATAACAAGCCATTTTATAGGGTCATGACGGCCGATAGTAGATCTCCTAGAGACGACAAGCGTCTCGAGGTTCTTGGTTACTATAATCCCCTC
CCAGGTAAATTTCTTTGTTTGTTTATTATGGGATTGATGATTCCTGCTAGTTTCTCGAAAATGGTGGTGAGAATTCGATTGTCGAGGTTTGGTTGTAATAACAAGCCGTT
TTACAGGGTCATGACGACCGATAGTAGATCTCCTAGAGACGACAAGCATCTTGAGGTTCTTGGTTACTATAATCCCCTCCCAGGTAAATTTCTTTGTTTGTTTATTATGG
GATTGATGATTCCTCCTAGTTTGCTTTGTTTTGGTGGGATATGGAATGAGAGTGAAAAGGAGTACGAAGGTGGGGAGTTGAGAGGGTTCGATGTAGATGTTGGAATTACA
CATGTCGACTTCCTAGGCCGGGTTTATCGAATAAGTTGTATAAATCCCGCCGAGTTTGATCTTGTGATAAGGTCACTTCCCATTCCATTCACGGTATCAAATAACCTCAA
TCAATGTAATCCTTCCTCATCCTTCCCATATAACCAAGGACAATATATCCCCTCCACAAACATCTCTAACCAAGGACAAAGTGCAGTAGCATCACTTACTCCAATGTCCA
ATAATGTATCTGCATATAACTTGGGAGATGATGTAGACCATTCTTGGGGGGAATTGAGAGATGAAGGGTTGGAAGTAGATGAAGATGATGACTGGAGTGTGGATAGAGAC
GATGAGTCAAATGTAGATGTAGATTACGATGAGGATAGAGATGATGGACTTGTTGAGCCAGAGGCAGATGGATATGGTCATAGGGAGGCCCCGCCTGCTAATGTAACTGA
AGCTCCACCTGCTAATGCATCTGAAGCTCCACCTGTTAATGCACCTGAGGCTATGCATGCATCAGTTTCGGTCGTCCCACGAACTTCTGTGACAGCTCCATCAGGTTATG
CTGCAAAGAATGTGGAAAGTGGAGTAATGAAGCTGAGATGA
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCNNKPFYRFMAADSRCPRDDKHLEVLGYYNPFPGKFLCLFIMGLMIPASLLCCSSKMVVRIRLSRFGCNNKPFYRVMTADSRSPRDDKRLEVLGYYNPL
PGKFLCLFIMGLMIPASFSKMVVRIRLSRFGCNNKPFYRVMTTDSRSPRDDKHLEVLGYYNPLPGKFLCLFIMGLMIPPSLLCFGGIWNESEKEYEGGELRGFDVDVGIT
HVDFLGRVYRISCINPAEFDLVIRSLPIPFTVSNNLNQCNPSSSFPYNQGQYIPSTNISNQGQSAVASLTPMSNNVSAYNLGDDVDHSWGELRDEGLEVDEDDDWSVDRD
DESNVDVDYDEDRDDGLVEPEADGYGHREAPPANVTEAPPANASEAPPVNAPEAMHASVSVVPRTSVTAPSGYAAKNVESGVMKLR