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Spg032841 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032841
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold11:15263121..15264814
RNA-Seq ExpressionSpg032841
SyntenySpg032841
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]9.1e-2756.55Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRS-------------SIRPRGNRSSLQTGELDKT------PEAIWYRVHTG-----YISLST
        LFGLSY EGTKST FSSK GG LVFS  LSIL      +               I PRGNR SLQTGELD T       E +  R++          LST
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRS-------------SIRPRGNRSSLQTGELDKT------PEAIWYRVHTG-----YISLST

Query:  LSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
        LSVLRDND VVEIELPVPD LPTSAE+S ++SSTW+ELY ESVH+
Subjt:  LSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]5.9e-2661.79Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLP
        LFGLSY E T+STGFSSKPGG LVFS  LSIL    +++    + PRGN  SLQTGELDKT              LSTLSVLRDND VVEIELPV DTL 
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLP

Query:  TSAENSRTSSSTWVELYIESVHI
        TSAE+S ++SSTW++LY ES+H+
Subjt:  TSAENSRTSSSTWVELYIESVHI

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.5e-2458.39Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-----------RIRS-----SIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDND
        LF LSY EGTKSTGFSSKPGG LVFS  LSIL               RI +     S  PRGNR SLQT ELDKT              LSTLSVLRDN+
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-----------RIRS-----SIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDND

Query:  AVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
         V  IELPVPD LPTSAE+S ++SSTW+ELY ESVH+
Subjt:  AVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.8e-2765.57Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-RIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPT
        LF LSY EGTKSTGFSSKPGG LV S  LSIL       +  + PRGNR SLQTGELDKT             SLSTLSVLRDN+AV  IELPVPDTLPT
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-RIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPT

Query:  SAENSRTSSSTWVELYIESVHI
        SAE+S ++SSTW+ELY ESVH+
Subjt:  SAENSRTSSSTWVELYIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2261.21Show/hide
Query:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSIR---PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSR
        STGFSSKPGG LVFS  LSI        ++   I    PRGNR  LQTGELDK               LSTLSVLRDNDAVVEIELP+PDTLPTSAE+S 
Subjt:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSIR---PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSR

Query:  TSSSTWVELYIESVHI
        ++SSTW+ELY ESVH+
Subjt:  TSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein6.6e-2361.21Show/hide
Query:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSIR---PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSR
        STGFSSKPGG LVFS  LSI        ++   I    PRGNR  LQTGELDK               LSTLSVLRDNDAVVEIELP+PDTLPTSAE+S 
Subjt:  STGFSSKPGGSLVFSGVLSIL---GCTSRIRSSIR---PRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPTSAENSR

Query:  TSSSTWVELYIESVHI
        ++SSTW+ELY ESVH+
Subjt:  TSSSTWVELYIESVHI

A0A5A7THH5 Uncharacterized protein4.4e-2756.55Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRS-------------SIRPRGNRSSLQTGELDKT------PEAIWYRVHTG-----YISLST
        LFGLSY EGTKST FSSK GG LVFS  LSIL      +               I PRGNR SLQTGELD T       E +  R++          LST
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRS-------------SIRPRGNRSSLQTGELDKT------PEAIWYRVHTG-----YISLST

Query:  LSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
        LSVLRDND VVEIELPVPD LPTSAE+S ++SSTW+ELY ESVH+
Subjt:  LSVLRDNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

A0A5A7UEC1 Uncharacterized protein2.9e-2661.79Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLP
        LFGLSY E T+STGFSSKPGG LVFS  LSIL    +++    + PRGN  SLQTGELDKT              LSTLSVLRDND VVEIELPV DTL 
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGC--TSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLP

Query:  TSAENSRTSSSTWVELYIESVHI
        TSAE+S ++SSTW++LY ES+H+
Subjt:  TSAENSRTSSSTWVELYIESVHI

A0A5A7UT17 CCHC-type domain-containing protein2.7e-2458.39Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-----------RIRS-----SIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDND
        LF LSY EGTKSTGFSSKPGG LVFS  LSIL               RI +     S  PRGNR SLQT ELDKT              LSTLSVLRDN+
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-----------RIRS-----SIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDND

Query:  AVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
         V  IELPVPD LPTSAE+S ++SSTW+ELY ESVH+
Subjt:  AVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

A0A5D3CJX3 CCHC-type domain-containing protein8.9e-2865.57Show/hide
Query:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-RIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPT
        LF LSY EGTKSTGFSSKPGG LV S  LSIL       +  + PRGNR SLQTGELDKT             SLSTLSVLRDN+AV  IELPVPDTLPT
Subjt:  LFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTS-RIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLRDNDAVVEIELPVPDTLPT

Query:  SAENSRTSSSTWVELYIESVHI
        SAE+S ++SSTW+ELY ESVH+
Subjt:  SAENSRTSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGATCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGA
AGGAACTAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTAGGCCAA
GAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTACTCCGT
GACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTC
TGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGATCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGA
AGGAACTAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCCGAAGCTCTATTAGGCCAA
GAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTTCGTTGTCGACGTTGAGTGTACTCCGT
GACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTC
TGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MVLRLKKIGKDHAKPAIAESEFNLSTSGFLFGLSYTEGTKSTGFSSKPGGSLVFSGVLSILGCTSRIRSSIRPRGNRSSLQTGELDKTPEAIWYRVHTGYISLSTLSVLR
DNDAVVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHIVNVL