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Spg032871 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032871
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:16059056..16061987
RNA-Seq ExpressionSpg032871
SyntenySpg032871
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.0e-2245.99Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEK--SSCKASHCRIWVQTHSGVYKLNQKLYLEEDKG-----VTEKLESVLS
        TKPTTD  IFQ NFI FLHHF  KLSE F+ERVK EEEEEFRGLRLKK++K   S    +    +     +  L+        +G      T KL+  + 
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEK--SSCKASHCRIWVQTHSGVYKLNQKLYLEEDKG-----VTEKLESVLS

Query:  YFGAFLDKLVGN----LIFISSGQEEVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHQVFNVSVGSTG
        +  + L  L  N    ++F      +VEIELP+PDTLPT AESF S+SS                Y  NQVMSGLH VFN+SVG TG
Subjt:  YFGAFLDKLVGN----LIFISSGQEEVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHQVFNVSVGSTG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.4e-1758.65Show/hide
Query:  VYKLNQKLYLEEDKGVTEKLE-SVLSYFGAFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVR
        V K NQKLYL+ + G + K   +  S     LDK V         +      VEIEL VPDTLPTSAES+ S+SSYF NQVMSGLH VFNVSVGSTGIVR
Subjt:  VYKLNQKLYLEEDKGVTEKLE-SVLSYFGAFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVR

Query:  GDDV
        GDDV
Subjt:  GDDV

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.3e-1384.62Show/hide
Query:  VEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV
        VEIELPVPDTLPTS ES  S+SSYF NQVMSGLH VFN+SV STGIVRGDDV
Subjt:  VEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.5e-1945.3Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKS---SCKASHCRIWVQTHS--GVYKLNQKLYLEEDKGVTEKLESV----
        TKPTT   IFQ NFISFLHHFP KL E FEERVK EEEEEFR ++ +  ++S   S K     ++    S   V+K NQKLYL+ + G + K + +    
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKS---SCKASHCRIWVQTHS--GVYKLNQKLYLEEDKGVTEKLESV----

Query:  -LSYFGAFLDK----LVGNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV
          S     LDK    L+  L  +      VEIELPVPD LPTSA+S  S+                  S+GSTGIVRGDDV
Subjt:  -LSYFGAFLDK----LVGNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]9.1e-2037.5Show/hide
Query:  IFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKSSCKASHCRIWVQTHSG----------------VYKLNQKLYLEEDKGVT-------
        +FQPNFISFLHHFP KLSE FEERVK EEEEEFRGLRLKKI KSSCKA+HCRIW    S                 V K NQKLY + + G +       
Subjt:  IFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKSSCKASHCRIWVQTHSG----------------VYKLNQKLYLEEDKGVT-------

Query:  ------------EKLESVLSYFGAFLD-KLVG------------------NLIFISSGQ---------------------------------EEVEIELP
                    +K+E  + Y    L  +L G                  N   +S GQ                                   +EIEL 
Subjt:  ------------EKLESVLSYFGAFLD-KLVG------------------NLIFISSGQ---------------------------------EEVEIELP

Query:  VPDTLPTSAESFRSSSS----------YFPNQVMSGLHQVFNVSVGSTGIVRGDDV
        VPDTLPTSAES  S+SS          Y P+ V +     + V   S GIVR +DV
Subjt:  VPDTLPTSAESFRSSSS----------YFPNQVMSGLHQVFNVSVGSTGIVRGDDV

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein9.5e-2345.99Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEK--SSCKASHCRIWVQTHSGVYKLNQKLYLEEDKG-----VTEKLESVLS
        TKPTTD  IFQ NFI FLHHF  KLSE F+ERVK EEEEEFRGLRLKK++K   S    +    +     +  L+        +G      T KL+  + 
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEK--SSCKASHCRIWVQTHSGVYKLNQKLYLEEDKG-----VTEKLESVLS

Query:  YFGAFLDKLVGN----LIFISSGQEEVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHQVFNVSVGSTG
        +  + L  L  N    ++F      +VEIELP+PDTLPT AESF S+SS                Y  NQVMSGLH VFN+SVG TG
Subjt:  YFGAFLDKLVGN----LIFISSGQEEVEIELPVPDTLPTSAESFRSSSS----------------YFPNQVMSGLHQVFNVSVGSTG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein4.6e-1758.65Show/hide
Query:  VYKLNQKLYLEEDKGVTEKLE-SVLSYFGAFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVR
        V K NQKLYL+ + G + K   +  S     LDK V         +      VEIEL VPDTLPTSAES+ S+SSYF NQVMSGLH VFNVSVGSTGIVR
Subjt:  VYKLNQKLYLEEDKGVTEKLE-SVLSYFGAFLDKLV----GNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVR

Query:  GDDV
        GDDV
Subjt:  GDDV

A0A5D3BMJ4 Retrotrans_gag domain-containing protein6.2e-1484.62Show/hide
Query:  VEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV
        VEIELPVPDTLPTS ES  S+SSYF NQVMSGLH VFN+SV STGIVRGDDV
Subjt:  VEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV

A0A5D3BZ50 Pentatricopeptide repeat-containing protein1.7e-1945.3Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKS---SCKASHCRIWVQTHS--GVYKLNQKLYLEEDKGVTEKLESV----
        TKPTT   IFQ NFISFLHHFP KL E FEERVK EEEEEFR ++ +  ++S   S K     ++    S   V+K NQKLYL+ + G + K + +    
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKS---SCKASHCRIWVQTHS--GVYKLNQKLYLEEDKGVTEKLESV----

Query:  -LSYFGAFLDK----LVGNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV
          S     LDK    L+  L  +      VEIELPVPD LPTSA+S  S+                  S+GSTGIVRGDDV
Subjt:  -LSYFGAFLDK----LVGNLIFISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV

A0A5D3CAC6 Uncharacterized protein4.4e-2037.5Show/hide
Query:  IFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKSSCKASHCRIWVQTHSG----------------VYKLNQKLYLEEDKGVT-------
        +FQPNFISFLHHFP KLSE FEERVK EEEEEFRGLRLKKI KSSCKA+HCRIW    S                 V K NQKLY + + G +       
Subjt:  IFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKSSCKASHCRIWVQTHSG----------------VYKLNQKLYLEEDKGVT-------

Query:  ------------EKLESVLSYFGAFLD-KLVG------------------NLIFISSGQ---------------------------------EEVEIELP
                    +K+E  + Y    L  +L G                  N   +S GQ                                   +EIEL 
Subjt:  ------------EKLESVLSYFGAFLD-KLVG------------------NLIFISSGQ---------------------------------EEVEIELP

Query:  VPDTLPTSAESFRSSSS----------YFPNQVMSGLHQVFNVSVGSTGIVRGDDV
        VPDTLPTSAES  S+SS          Y P+ V +     + V   S GIVR +DV
Subjt:  VPDTLPTSAESFRSSSS----------YFPNQVMSGLHQVFNVSVGSTGIVRGDDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCAATTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGAAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTTATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCATT
TTCATTTCTTCAGGCCAAGAGGAAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTTACTTTCCAAACCAGGT
TATGTCAGGGCTGCACCAAGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCAATTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGAAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGGAGGAAGATAAAGGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTTATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCATT
TTCATTTCTTCAGGCCAAGAGGAAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTTACTTTCCAAACCAGGT
TATGTCAGGGCTGCACCAAGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTAA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEQFEERVKEEEEEEFRGLRLKKIEKSSCKASHCRIWVQTHSGVYKLNQKLYLEEDKGVTEKLESVLSYFGAFLDKLVGNLI
FISSGQEEVEIELPVPDTLPTSAESFRSSSSYFPNQVMSGLHQVFNVSVGSTGIVRGDDV