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Spg032895 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032895
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold11:13761994..13765308
RNA-Seq ExpressionSpg032895
SyntenySpg032895
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]7.6e-0873.17Show/hide
Query:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP
        CPLI  GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP
Subjt:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]4.8e-1071.74Show/hide
Query:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDL
        CPLI   ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R++
Subjt:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDL

KAF3433792.1 hypothetical protein FNV43_RR24895 [Rhamnella rubrinervis]2.5e-1140.78Show/hide
Query:  ESIKASYESILMDLGYDYFEARLLFDNALMDFFEEDEYEDEIILIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGL
        ++IK  ++ + MDLG           +  +  FE+D+ +DE+I IF +L+  E  +    R+PCRTS LRGHDYV+ELLN +++R + C RM +  FI  
Subjt:  ESIKASYESILMDLGYDYFEARLLFDNALMDFFEEDEYEDEIILIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGL

Query:  CEE
        CEE
Subjt:  CEE

KAF7148819.1 hypothetical protein RHSIM_Rhsim03G0151700 [Rhododendron simsii]3.8e-0744.12Show/hide
Query:  EDEYEDEIILIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCE
        +D+ EDE +++   L + E +   +  RPCRTS LRGHDYVVE+LN ++ R     RM+   FI  CE
Subjt:  EDEYEDEIILIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCE

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0972.73Show/hide
Query:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        CPL   GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR

TrEMBL top hitse value%identityAlignment
A0A396GCJ0 Putative harbinger transposase-derived nuclease domain-containing protein5.5e-0441.67Show/hide
Query:  EEDEYEDEII--LIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE
        +EDE +D+I    IF   L+ E     L + PCRTS L GH +V E+L  N TR +   RM +  F  LC E
Subjt:  EEDEYEDEII--LIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE

A0A396J350 Uncharacterized protein5.5e-0441.67Show/hide
Query:  EEDEYEDEII--LIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE
        +EDE +D+I    IF   L+ E     L + PCRTS L GH +V E+L  N TR +   RM +  F  LC E
Subjt:  EEDEYEDEII--LIFFHLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE

A0A5A7SPG1 Pol protein3.7e-0873.17Show/hide
Query:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP
        CPLI  GESGQ  DSI L F GQ R+GSWEHN+TRWN LLP
Subjt:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLP

A0A5A7U2P4 Integrase catalytic domain-containing protein2.3e-1071.74Show/hide
Query:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDL
        CPLI   ESGQ ADS+ L FWGQ RV SWEHNHTRWNSLLP  R++
Subjt:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSRDL

A0A5D3C3J6 Gag/pol protein5.1e-1072.73Show/hide
Query:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR
        CPL   GESGQ  DSI L FWGQ RVGSWEHNHTRWNS +P  R
Subjt:  CPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLLPDSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAGGAGCTGCGAAATAGGTGTTGGAAGGTTGCCCAGTCAGTTTTGGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCACGGACGAAT
CGGAGCGGTCTCGGATTTTCCAGAAATGCGGTCGCATTTCACTTTTGCCTTCCTAGAAATGTGGTCGCATTTCTGGGAAATTTCAGCTTTTCCTCTGGGTTGCCCTTTGA
TTAGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTT
CCCGACTCTAGGGACCTCTGGGGTGGAGTGAAAGACATCTCATTTATTCTCCTTCTCTCAAAGATCTCTCCTAAAAGACTCCCACCAGTCTCCTGCTTCAAGAAGTCTCA
GAGAGATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCATTTTCGATCTCACAAGCAAGAAAAGGCGAATCGATCAAGGCTTCCTACGAAAGTATTT
TGATGGATCTTGGTTACGATTATTTTGAAGCTCGCTTACTATTTGATAATGCTCTGATGGATTTTTTTGAAGAAGATGAATATGAGGATGAAATTATTTTGATATTTTTT
CATTTGTTAATGGAGGAATTGCATAAGGAACGATTATCTAGACGACCGTGCAGAACTTCCACCCTTAGAGGTCATGATTATGTGGTTGAGCTGCTAAATGCTAATGATAC
CCGATACTTTCATTGCTCTAGGATGAGAAGAGATGCATTTATAGGATTATGTGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAGGAGCTGCGAAATAGGTGTTGGAAGGTTGCCCAGTCAGTTTTGGGGTCAAAACAGCCAGTTAGGTGCGAAGAAGACTCGTCAACAACGACCCACGGACGAAT
CGGAGCGGTCTCGGATTTTCCAGAAATGCGGTCGCATTTCACTTTTGCCTTCCTAGAAATGTGGTCGCATTTCTGGGAAATTTCAGCTTTTCCTCTGGGTTGCCCTTTGA
TTAGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTT
CCCGACTCTAGGGACCTCTGGGGTGGAGTGAAAGACATCTCATTTATTCTCCTTCTCTCAAAGATCTCTCCTAAAAGACTCCCACCAGTCTCCTGCTTCAAGAAGTCTCA
GAGAGATACCGGTGTAACCAATTGGTGGTGTTCGCACAAGAAGGTTGCTGCATTTTCGATCTCACAAGCAAGAAAAGGCGAATCGATCAAGGCTTCCTACGAAAGTATTT
TGATGGATCTTGGTTACGATTATTTTGAAGCTCGCTTACTATTTGATAATGCTCTGATGGATTTTTTTGAAGAAGATGAATATGAGGATGAAATTATTTTGATATTTTTT
CATTTGTTAATGGAGGAATTGCATAAGGAACGATTATCTAGACGACCGTGCAGAACTTCCACCCTTAGAGGTCATGATTATGTGGTTGAGCTGCTAAATGCTAATGATAC
CCGATACTTTCATTGCTCTAGGATGAGAAGAGATGCATTTATAGGATTATGTGAAGAGTGA
Protein sequenceShow/hide protein sequence
MVEELRNRCWKVAQSVLGSKQPVRCEEDSSTTTHGRIGAVSDFPEMRSHFTFAFLEMWSHFWEISAFPLGCPLISMGESGQHADSISLPFWGQYRVGSWEHNHTRWNSLL
PDSRDLWGGVKDISFILLLSKISPKRLPPVSCFKKSQRDTGVTNWWCSHKKVAAFSISQARKGESIKASYESILMDLGYDYFEARLLFDNALMDFFEEDEYEDEIILIFF
HLLMEELHKERLSRRPCRTSTLRGHDYVVELLNANDTRYFHCSRMRRDAFIGLCEE