; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032896 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032896
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold11:13137303..13140363
RNA-Seq ExpressionSpg032896
SyntenySpg032896
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]7.2e-0439.5Show/hide
Query:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQP------PSPAVDPCAAVFLVSALSPAPPRLLALSLSLVGLSPSQVAPPV-
        GESG   DSI L F GQDR+GSWEHN+TRWN LL   R R     + ++P      PS +V P  AV  VS  +   P   A+        P+ + PP+ 
Subjt:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQP------PSPAVDPCAAVFLVSALSPAPPRLLALSLSLVGLSPSQVAPPV-

Query:  QSLPPRRVVTAATRGVAAA
            P RV  AA+   +A+
Subjt:  QSLPPRRVVTAATRGVAAA

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.6e-0660.42Show/hide
Query:  ESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQ
        ESG  ADS+ L FWGQDRV SWEHNHTRWNSLL   R     S++ ++
Subjt:  ESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQ

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0684.38Show/hide
Query:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNS
        GESG   DSI L FWGQDRVGSWEHNHTRWNS
Subjt:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNS

TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein7.8e-0465.62Show/hide
Query:  ISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRR
        + L  WGQD+VGSWEHNH RWNSL+ D R+ R
Subjt:  ISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRR

A0A5A7SPG1 Pol protein3.5e-0439.5Show/hide
Query:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQP------PSPAVDPCAAVFLVSALSPAPPRLLALSLSLVGLSPSQVAPPV-
        GESG   DSI L F GQDR+GSWEHN+TRWN LL   R R     + ++P      PS +V P  AV  VS  +   P   A+        P+ + PP+ 
Subjt:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQP------PSPAVDPCAAVFLVSALSPAPPRLLALSLSLVGLSPSQVAPPV-

Query:  QSLPPRRVVTAATRGVAAA
            P RV  AA+   +A+
Subjt:  QSLPPRRVVTAATRGVAAA

A0A5A7U2P4 Integrase catalytic domain-containing protein7.5e-0760.42Show/hide
Query:  ESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQ
        ESG  ADS+ L FWGQDRV SWEHNHTRWNSLL   R     S++ ++
Subjt:  ESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQ

A0A5D3C3J6 Gag/pol protein5.8e-0784.38Show/hide
Query:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNS
        GESG   DSI L FWGQDRVGSWEHNHTRWNS
Subjt:  GESGLHADSISLPFWGQDRVGSWEHNHTRWNS

A0A5D3E3M6 Uncharacterized protein7.8e-0465.62Show/hide
Query:  ISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRR
        + L  WGQD+VGSWEHNH RWNSL+ D R+ R
Subjt:  ISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCTCGA
CTCTAGGAGCCGCAGACCCCCCTCGGTGATTCGTCTTCAGCCGCCCAGCCCCGCCGTCGATCCGTGCGCCGCCGTGTTCCTCGTCTCAGCGCTGTCGCCAGCACCGCCCC
GCCTTCTCGCACTCTCTCTCTCTCTCGTTGGTCTCTCTCCCTCTCAAGTCGCGCCGCCCGTCCAGTCGCTGCCTCCTCGACGCGTCGTCACCGCTGCAACAAGGGGTGTC
GCCGCCGCCGCTTCACCGCTGTTCAGATTCGCGATCTTGCGTGTCCAGCCTCTCGGAGTGTCTTGTTCTCGCGTTTTTGCCTCTGTCCAGCATCAATTTGGGCGTTTTTG
GTGCCGTTTAGCGATTTCGCGCCGTAAAAGTGATCGATTGAGTTCGAATCACTTAAGCTCGAATACCCACTACCCAAGGAGTGCTCTAACACGCTGTTCGAGGAGCTTAT
CTGAATTTCTTGAGCGGTTTAAGGAGTTCTTAGGAGCGCTCGTAAGCTTTTTGCATGTTGCTTTAGTGTTTCCGGGCTATGTTGCATGTGAGTATGCATTCGATGAGCCC
GGTGGTGCTGAGGAGGTGCACGAGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCTCGA
CTCTAGGAGCCGCAGACCCCCCTCGGTGATTCGTCTTCAGCCGCCCAGCCCCGCCGTCGATCCGTGCGCCGCCGTGTTCCTCGTCTCAGCGCTGTCGCCAGCACCGCCCC
GCCTTCTCGCACTCTCTCTCTCTCTCGTTGGTCTCTCTCCCTCTCAAGTCGCGCCGCCCGTCCAGTCGCTGCCTCCTCGACGCGTCGTCACCGCTGCAACAAGGGGTGTC
GCCGCCGCCGCTTCACCGCTGTTCAGATTCGCGATCTTGCGTGTCCAGCCTCTCGGAGTGTCTTGTTCTCGCGTTTTTGCCTCTGTCCAGCATCAATTTGGGCGTTTTTG
GTGCCGTTTAGCGATTTCGCGCCGTAAAAGTGATCGATTGAGTTCGAATCACTTAAGCTCGAATACCCACTACCCAAGGAGTGCTCTAACACGCTGTTCGAGGAGCTTAT
CTGAATTTCTTGAGCGGTTTAAGGAGTTCTTAGGAGCGCTCGTAAGCTTTTTGCATGTTGCTTTAGTGTTTCCGGGCTATGTTGCATGTGAGTATGCATTCGATGAGCCC
GGTGGTGCTGAGGAGGTGCACGAGGAGTGA
Protein sequenceShow/hide protein sequence
MGESGLHADSISLPFWGQDRVGSWEHNHTRWNSLLLDSRSRRPPSVIRLQPPSPAVDPCAAVFLVSALSPAPPRLLALSLSLVGLSPSQVAPPVQSLPPRRVVTAATRGV
AAAASPLFRFAILRVQPLGVSCSRVFASVQHQFGRFWCRLAISRRKSDRLSSNHLSSNTHYPRSALTRCSRSLSEFLERFKEFLGALVSFLHVALVFPGYVACEYAFDEP
GGAEEVHEE