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Spg032906 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032906
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold11:15364952..15367053
RNA-Seq ExpressionSpg032906
SyntenySpg032906
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAH66131.1 OSIGBa0135L04.5 [Oryza sativa]3.9e-0831.61Show/hide
Query:  PPRVNLHKRGMEIAINCPEQIDEQNPNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRA-----EWNPPPENSWKINVDAAWYSSS--IGVGTICKNS
        PP V + KR +E  I+   ++ +      S N    K++ +YS       R P + D S +      W  P +   K+NVD ++ +SS   G+G + +NS
Subjt:  PPRVNLHKRGMEIAINCPEQIDEQNPNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRA-----EWNPPPENSWKINVDAAWYSSS--IGVGTICKNS

Query:  LGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQL
         G +I  A  F D    PL  EL A  EG+ + +    + I+VE DC EAV L+S   +  +E   +V +I QL
Subjt:  LGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQL

XP_010666976.1 PREDICTED: uncharacterized protein LOC104884079 [Beta vulgaris subsp. vulgaris]4.6e-0933.6Show/hide
Query:  PNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSS-IGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVK
        PNS  +   + + +EEY        R+  V  +S   WNPP    WKINVDA+  +   +G+G I ++ LG +           ++P + E +AI  GV+
Subjt:  PNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSS-IGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVK

Query:  LGILLGGVNIIVESDCLEAVNLVSR
        LG   G VN+++ESDCL  +N + +
Subjt:  LGILLGGVNIIVESDCLEAVNLVSR

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]7.1e-1035.34Show/hide
Query:  WILKYLEEYSNA--NKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILLGG
        WI  Y + YS A  NKR   + +        W PP +++ K+N DAA  S+S G+G I ++  G ++   + F  +   PL  E+R I E +KL      
Subjt:  WILKYLEEYSNA--NKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILLGG

Query:  VNIIVESDCLEAVNLV
          ++VESDC EA+ LV
Subjt:  VNIIVESDCLEAVNLV

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.3e-0830.77Show/hide
Query:  NPNSYSINTWILKYLEEYSNANKRNQRKPT---------VADRSRAEWNPPPENSWKINVDAAWY--SSSIGVGTICKNSLGNIIGVAASFYDLEFTPLL
        +P +  I   I +Y+   +  N   + K T         + D + A+W PP  NSWK+N +AAW   +++ G+G I ++  G +I  +      E     
Subjt:  NPNSYSINTWILKYLEEYSNANKRNQRKPT---------VADRSRAEWNPPPENSWKINVDAAWY--SSSIGVGTICKNSLGNIIGVAASFYDLEFTPLL

Query:  DELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAK
         E+ AI EG++         I +ESD LEA++L+ R+ +   E   L+EEIWQ+ K
Subjt:  DELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAK

XP_022158489.1 uncharacterized protein LOC111024968 [Momordica charantia]1.9e-1038.41Show/hide
Query:  WILKYLEE----YSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILL
        WILKY EE    Y N  KR  R P V      EW PP     K+N DAA      GVG + +     I+G    F+ ++ TPLL ++ AI EG+ L   L
Subjt:  WILKYLEE----YSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILL

Query:  GGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILRGYPLILFQ
        G   ++VE+D LEA+NL+  +     EA   VE+I   A   R +  I FQ
Subjt:  GGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILRGYPLILFQ

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047863.4e-1035.34Show/hide
Query:  WILKYLEEYSNA--NKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILLGG
        WI  Y + YS A  NKR   + +        W PP +++ K+N DAA  S+S G+G I ++  G ++   + F  +   PL  E+R I E +KL      
Subjt:  WILKYLEEYSNA--NKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILLGG

Query:  VNIIVESDCLEAVNLV
          ++VESDC EA+ LV
Subjt:  VNIIVESDCLEAVNLV

A0A6J1CP26 uncharacterized protein LOC1110134121.1e-0830.77Show/hide
Query:  NPNSYSINTWILKYLEEYSNANKRNQRKPT---------VADRSRAEWNPPPENSWKINVDAAWY--SSSIGVGTICKNSLGNIIGVAASFYDLEFTPLL
        +P +  I   I +Y+   +  N   + K T         + D + A+W PP  NSWK+N +AAW   +++ G+G I ++  G +I  +      E     
Subjt:  NPNSYSINTWILKYLEEYSNANKRNQRKPT---------VADRSRAEWNPPPENSWKINVDAAWY--SSSIGVGTICKNSLGNIIGVAASFYDLEFTPLL

Query:  DELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAK
         E+ AI EG++         I +ESD LEA++L+ R+ +   E   L+EEIWQ+ K
Subjt:  DELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAK

A0A6J1DZK3 uncharacterized protein LOC1110249689.0e-1138.41Show/hide
Query:  WILKYLEE----YSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILL
        WILKY EE    Y N  KR  R P V      EW PP     K+N DAA      GVG + +     I+G    F+ ++ TPLL ++ AI EG+ L   L
Subjt:  WILKYLEE----YSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGVKLGILL

Query:  GGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILRGYPLILFQ
        G   ++VE+D LEA+NL+  +     EA   VE+I   A   R +  I FQ
Subjt:  GGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILRGYPLILFQ

A0A803P3X4 Uncharacterized protein2.9e-0933.11Show/hide
Query:  PNSYSINTWILKYLEEY--SNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSS--IGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISE
        P + +I  W  K+L E+  SN  KR+++      R  A W PP  +++KINVDA   + +    + ++ ++  G +   AA+      TPL  EL+AI+ 
Subjt:  PNSYSINTWILKYLEEY--SNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSS--IGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISE

Query:  GVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILR
        G++ GI        VESDCL+AV LV R++E   +   +V  I  L + +R
Subjt:  GVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILR

A0A803PWX1 Uncharacterized protein6.9e-1133.33Show/hide
Query:  PNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSS--IGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGV
        P + +I  W  K+L E+   N   Q       R  A+W PP   S+K+NVDA   +     G+ ++ ++  G ++  A  F + + +PL  EL+AI  G+
Subjt:  PNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSS--IGVGTICKNSLGNIIGVAASFYDLEFTPLLDELRAISEGV

Query:  KLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQL
        + GI     +  VESDCL+AVNLV +E+E   +   L+ +I +L
Subjt:  KLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTGAATATTCCGCCTAGAGTTAATTTGCATAAGAGAGGAATGGAAATAGCGATAAATTGCCCAGAACAAATTGATGAACAAAATCCAAATTCCTACTCAATCAA
TACATGGATTCTAAAATACCTGGAGGAATATTCAAACGCCAACAAAAGAAATCAGAGGAAACCCACAGTGGCTGATAGATCTCGAGCTGAATGGAATCCGCCCCCAGAGA
ATAGTTGGAAAATCAATGTGGATGCAGCTTGGTATTCTTCATCCATTGGAGTTGGCACCATCTGCAAAAATTCGTTGGGAAATATCATCGGAGTTGCTGCTTCCTTCTAC
GATCTGGAATTCACACCCCTGCTAGATGAGCTTAGGGCAATTTCTGAAGGAGTGAAATTGGGGATTTTGCTTGGAGGAGTAAACATTATTGTGGAATCTGATTGCTTGGA
GGCCGTGAACTTGGTGTCGAGAGAAAAAGAGACGTGGAATGAAGCTAAAGTCTTAGTGGAAGAAATATGGCAGCTGGCAAAAATTTTGAGAGGTTATCCTCTAATTTTGT
TTCAAGAGAATGTAATGGAATTGCTGATGCAATTGCCAAATATGCAAGGAGGAATGAATGTATGGAAGTGTGGAAGGATAATATTCCAGAGTGGATTGTATCATTGGTTC
TTTGACCAAGGTAATTTTGGACCACTCCGATATGCAAGGATTGGACGAGGACAACGCGATACCAGCCCAAGGAGATATCTAGAAAACGGATCCCAGAGGAAGAATAGGCC
AAAGGGTCGGGCCAAGGCTGGACCCTGGATCGCCTTCGAACGCCTGGAAACCCTAAAGCAAGAACAGATATTTAAACCCTTCCTCGTGGCTGAAGAAGGGGATCCCGAAA
CTCATTCTCTGAACCCTACTCCTTCTCTTGCTCTCTTGCTCTCTTCCTTCAGCTTTCTGACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTGAATATTCCGCCTAGAGTTAATTTGCATAAGAGAGGAATGGAAATAGCGATAAATTGCCCAGAACAAATTGATGAACAAAATCCAAATTCCTACTCAATCAA
TACATGGATTCTAAAATACCTGGAGGAATATTCAAACGCCAACAAAAGAAATCAGAGGAAACCCACAGTGGCTGATAGATCTCGAGCTGAATGGAATCCGCCCCCAGAGA
ATAGTTGGAAAATCAATGTGGATGCAGCTTGGTATTCTTCATCCATTGGAGTTGGCACCATCTGCAAAAATTCGTTGGGAAATATCATCGGAGTTGCTGCTTCCTTCTAC
GATCTGGAATTCACACCCCTGCTAGATGAGCTTAGGGCAATTTCTGAAGGAGTGAAATTGGGGATTTTGCTTGGAGGAGTAAACATTATTGTGGAATCTGATTGCTTGGA
GGCCGTGAACTTGGTGTCGAGAGAAAAAGAGACGTGGAATGAAGCTAAAGTCTTAGTGGAAGAAATATGGCAGCTGGCAAAAATTTTGAGAGGTTATCCTCTAATTTTGT
TTCAAGAGAATGTAATGGAATTGCTGATGCAATTGCCAAATATGCAAGGAGGAATGAATGTATGGAAGTGTGGAAGGATAATATTCCAGAGTGGATTGTATCATTGGTTC
TTTGACCAAGGTAATTTTGGACCACTCCGATATGCAAGGATTGGACGAGGACAACGCGATACCAGCCCAAGGAGATATCTAGAAAACGGATCCCAGAGGAAGAATAGGCC
AAAGGGTCGGGCCAAGGCTGGACCCTGGATCGCCTTCGAACGCCTGGAAACCCTAAAGCAAGAACAGATATTTAAACCCTTCCTCGTGGCTGAAGAAGGGGATCCCGAAA
CTCATTCTCTGAACCCTACTCCTTCTCTTGCTCTCTTGCTCTCTTCCTTCAGCTTTCTGACTTAA
Protein sequenceShow/hide protein sequence
MEVNIPPRVNLHKRGMEIAINCPEQIDEQNPNSYSINTWILKYLEEYSNANKRNQRKPTVADRSRAEWNPPPENSWKINVDAAWYSSSIGVGTICKNSLGNIIGVAASFY
DLEFTPLLDELRAISEGVKLGILLGGVNIIVESDCLEAVNLVSREKETWNEAKVLVEEIWQLAKILRGYPLILFQENVMELLMQLPNMQGGMNVWKCGRIIFQSGLYHWF
FDQGNFGPLRYARIGRGQRDTSPRRYLENGSQRKNRPKGRAKAGPWIAFERLETLKQEQIFKPFLVAEEGDPETHSLNPTPSLALLLSSFSFLT