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Spg032909 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032909
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold11:13857643..13864751
RNA-Seq ExpressionSpg032909
SyntenySpg032909
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034955.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-0458.14Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQV
        I   ESGQ ADSICL FW +    AG++ TQ+GIHSFP LG +
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQV
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0468.29Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
        I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
TYK04972.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.5e-0460.98Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
        I MGESGQ  DSICL FW +   EAG++ TQ+ IHSFP +G
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-0566.67Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQ
        I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG+
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQ
TYK30754.1 gag/pol protein [Cucumis melo var. makuwa]4.1e-0760Show/hide
Query:  SMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDEC
        ++G+SGQ ADSICL FW + +   G++ TQ+GIHSFP LGQVD+C
Subjt:  SMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDEC
TrEMBL top hitse value%identityAlignment
A0A5A7T0G5 Gag/pol protein7.1e-0558.14Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQV
        I   ESGQ ADSICL FW +    AG++ TQ+GIHSFP LG +
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQV
A0A5A7U202 Reverse transcriptase5.4e-0568.29Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
        I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
A0A5D3C1B9 Transposon Tf2-6 polyprotein7.1e-0560.98Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
        I MGESGQ  DSICL FW +   EAG++ TQ+ IHSFP +G
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLG
A0A5D3CBX3 Reverse transcriptase4.1e-0566.67Show/hide
Query:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQ
        I  GESGQ ADSI L FWGQDRV      TQ+GIHSFP LG+
Subjt:  ISMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQ
A0A5D3E4C4 Gag/pol protein2.0e-0760Show/hide
Query:  SMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDEC
        ++G+SGQ ADSICL FW + +   G++ TQ+GIHSFP LGQVD+C
Subjt:  SMGESGQYADSICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDEC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCCACGGATATCGACCAATGCAGTCCAACCACTAAACAGGAGTTCCCTCGGGCCAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAACCCTTAAGGGA
ACACACATCTACTTACCCCAATAGGGAAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGGTCTTGCCCCTGAAATGAATACCCCCACCCGCATGT
CTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACATAGTGTCACTAGGATAAGCATGGGTGAGAGTGGTCAATACGCCGACTCA
ATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGAGGCTGGGGACTTGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAGGACAAGTAGATGAGTGTTGTTCATT
AGAGGAGCACTGGTCCATTAGGTCCCCTGCTAACTCCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCCTATGAAATCAAGAAAGACGTTCTTCATA
TTTCAGAGACGACAACGACGATCTCAGAGGTCGGCCCCAACAATGCTACCGTACGGAAGGGTGATCGCTCCCAAGGCGACTCGCAGGCAGATCATGGGGATCTCACGGTG
CAACCTAATGGAAGATACCGTAGGATACGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCCACGGATATCGACCAATGCAGTCCAACCACTAAACAGGAGTTCCCTCGGGCCAGGAGAGGACGACGCGCCTTTGTTCAAGCCCCGGAATCAACCCTTAAGGGA
ACACACATCTACTTACCCCAATAGGGAAAGGAGTGAATTCCATCTTGTACTGTTATGTTCCCAGCCCTCATTCGGTCTTGCCCCTGAAATGAATACCCCCACCCGCATGT
CTCCTACATGGATGCTTTGGATCATTGCATCTGTATCGGATACAAGGTGGGTCGTATCACATAGTGTCACTAGGATAAGCATGGGTGAGAGTGGTCAATACGCCGACTCA
ATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGAGGCTGGGGACTTGACAACACAAGAAGGAATTCACTCATTCCCACTTCTAGGACAAGTAGATGAGTGTTGTTCATT
AGAGGAGCACTGGTCCATTAGGTCCCCTGCTAACTCCGGGGAAGATCAATTGGTGGTGTCCCAATTGTTGACGCTTGGTCCCTATGAAATCAAGAAAGACGTTCTTCATA
TTTCAGAGACGACAACGACGATCTCAGAGGTCGGCCCCAACAATGCTACCGTACGGAAGGGTGATCGCTCCCAAGGCGACTCGCAGGCAGATCATGGGGATCTCACGGTG
CAACCTAATGGAAGATACCGTAGGATACGTTGA
Protein sequenceShow/hide protein sequence
MCPRISTNAVQPLNRSSLGPGEDDAPLFKPRNQPLREHTSTYPNRERSEFHLVLLCSQPSFGLAPEMNTPTRMSPTWMLWIIASVSDTRWVVSHSVTRISMGESGQYADS
ICLPFWGQDRVEAGDLTTQEGIHSFPLLGQVDECCSLEEHWSIRSPANSGEDQLVVSQLLTLGPYEIKKDVLHISETTTTISEVGPNNATVRKGDRSQGDSQADHGDLTV
QPNGRYRRIR