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Spg032920 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032920
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold11:14899808..14901719
RNA-Seq ExpressionSpg032920
SyntenySpg032920
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0753.66Show/hide
Query:  LFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        LF L   EGTKR    R N+  L            +++   +F    L TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  LFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

KAA0056731.1 hypothetical protein E6C27_scaffold29G00280 [Cucumis melo var. makuwa]6.2e-0780Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRRIG
        PL  LSVLRDNDA+VEIELPVPDTLPTSAE+S+S+SR  G
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRRIG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-0791.67Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0767.92Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0767.92Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.9e-0853.66Show/hide
Query:  LFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        LF L   EGTKR    R N+  L            +++   +F    L TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  LFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5A7VMG9 Reverse transcriptase3.0e-0767.92Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5D3DCA4 Uncharacterized protein3.0e-0780Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRRIG
        PL  LSVLRDNDA+VEIELPVPDTLPTSAE+S+S+SR  G
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRRIG

A0A5D3DIM8 Uncharacterized protein3.9e-0751.22Show/hide
Query:  LFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        LF LS  EGTKR    R + +              +++   +F    L TLSVLRDND VVEIELPVPDTLPTSAES RS+S
Subjt:  LFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

A0A5D3DX39 Reverse transcriptase3.0e-0767.92Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+S
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACCTCTGGTTTTTTATTCAGTTTGAGCTGCACAGAAGGAACTAAGAGAGCACATGATTTTCGTGCAAACCAGGAAGATCTCTGGTTTTCTCTGGTTTTTCGGGC
ATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGC
CTGATACACTGCCAACGTCAGCTGAAAGTTCCAGATCAAGCTCCAGAAGGATTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACCTCTGGTTTTTTATTCAGTTTGAGCTGCACAGAAGGAACTAAGAGAGCACATGATTTTCGTGCAAACCAGGAAGATCTCTGGTTTTCTCTGGTTTTTCGGGC
ATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTTGTAGAGATCGAGCTCCCGGTGC
CTGATACACTGCCAACGTCAGCTGAAAGTTCCAGATCAAGCTCCAGAAGGATTGGATAA
Protein sequenceShow/hide protein sequence
MPTSGFLFSLSCTEGTKRAHDFRANQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSRRIG