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Spg032939 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032939
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:13405079..13407268
RNA-Seq ExpressionSpg032939
SyntenySpg032939
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]8.8e-0544.44Show/hide
Query:  RPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSF------QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE
        RPRGNR SLQT +L KT+EIELP+PD LPT A+SF       ++L +    V  + + T           + +GQQ SLEE
Subjt:  RPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSF------QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.2e-0536.21Show/hide
Query:  RPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKS--------FQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE
        RPRGNR+SLQT EL KT                 +EIELPVPD LPTSA+S         ++  ++V  V     F  ++  G      +  G    +  
Subjt:  RPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKS--------FQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE

Query:  DDVHWLHAISRTKLAG
        D+V WLHA+   K AG
Subjt:  DDVHWLHAISRTKLAG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.0e-0539.36Show/hide
Query:  PRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIK----LQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG
        PRGNR +L T +L KT+EIELPVPD LPTSA+S +      L+     VH  +   +      +     +G    +  DD+ WLHA+   K AG
Subjt:  PRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIK----LQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.1e-0436.94Show/hide
Query:  HFFRPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSFQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW
        +  RPRGNR SLQT +L KT                 +EIELPVPD LPTSA+SF+   +  G V                              DDV W
Subjt:  HFFRPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSFQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW

Query:  LHAISRTKLAG
        LHA+ R K AG
Subjt:  LHAISRTKLAG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]8.0e-0638.74Show/hide
Query:  PRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSF----QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW
        PRGNRSSLQT EL KT                 +EIELPVPD LPTSA+SF       L+     VH  +   +      +     +G    +  DDV W
Subjt:  PRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSF----QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW

Query:  LHAISRTKLAG
        LH + R K+AG
Subjt:  LHAISRTKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein4.3e-0544.44Show/hide
Query:  RPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSF------QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE
        RPRGNR SLQT +L KT+EIELP+PD LPT A+SF       ++L +    V  + + T           + +GQQ SLEE
Subjt:  RPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSF------QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.5e-0536.21Show/hide
Query:  RPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKS--------FQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE
        RPRGNR+SLQT EL KT                 +EIELPVPD LPTSA+S         ++  ++V  V     F  ++  G      +  G    +  
Subjt:  RPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKS--------FQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEE

Query:  DDVHWLHAISRTKLAG
        D+V WLHA+   K AG
Subjt:  DDVHWLHAISRTKLAG

A0A5A7UAH6 CCHC-type domain-containing protein1.5e-0539.36Show/hide
Query:  PRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIK----LQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG
        PRGNR +L T +L KT+EIELPVPD LPTSA+S +      L+     VH  +   +      +     +G    +  DD+ WLHA+   K AG
Subjt:  PRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIK----LQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHWLHAISRTKLAG

A0A5A7VIY9 Uncharacterized protein3.9e-0638.74Show/hide
Query:  PRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSF----QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW
        PRGNRSSLQT EL KT                 +EIELPVPD LPTSA+SF       L+     VH  +   +      +     +G    +  DDV W
Subjt:  PRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSF----QIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW

Query:  LHAISRTKLAG
        LH + R K+AG
Subjt:  LHAISRTKLAG

A0A5D3BAD1 Retrotrans_gag domain-containing protein5.6e-0536.94Show/hide
Query:  HFFRPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSFQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW
        +  RPRGNR SLQT +L KT                 +EIELPVPD LPTSA+SF+   +  G V                              DDV W
Subjt:  HFFRPRGNRSSLQTRELAKT-----------------MEIELPVPDKLPTSAKSFQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQQVSLEEDDVHW

Query:  LHAISRTKLAG
        LHA+ R K AG
Subjt:  LHAISRTKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAGAAGCACGAATCTGGATTTTCTGTGTTCGGGGGATTTCTGGACAAATCCGTTGGGAATCTCA
TTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCCAAGACTATGGAGATCGAGCTCCCGGTGCCTGATAAGCTGCCAACATCTGCTA
AAAGCTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTACATTGTGTTATTTTTCAAACCGAGTTATGTCAGGGCTGCACTTCATGTTCAACAATTCAGCAGGGTCAA
CAGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTCCTCACCGGAGATTTGGAAGCAATTCGGGGCCTAAACGAGCAAA
ACTGGAGTGTAAAATCACTATTCTGCCCTTGGAGCCATCCCAGCATCGAGACCCTGCCATCCAAGTGTCTGGACACAGTTCAAATAAGGAAAATACTTGGGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAGAGAAGCACGAATCTGGATTTTCTGTGTTCGGGGGATTTCTGGACAAATCCGTTGGGAATCTCA
TTTTCATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCCAAGACTATGGAGATCGAGCTCCCGGTGCCTGATAAGCTGCCAACATCTGCTA
AAAGCTTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTACATTGTGTTATTTTTCAAACCGAGTTATGTCAGGGCTGCACTTCATGTTCAACAATTCAGCAGGGTCAA
CAGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTCCTCACCGGAGATTTGGAAGCAATTCGGGGCCTAAACGAGCAAA
ACTGGAGTGTAAAATCACTATTCTGCCCTTGGAGCCATCCCAGCATCGAGACCCTGCCATCCAAGTGTCTGGACACAGTTCAAATAAGGAAAATACTTGGGCGTGA
Protein sequenceShow/hide protein sequence
MTRSRFNFRRKVEGSREARIWIFCVRGISGQIRWESHFHFFRPRGNRSSLQTRELAKTMEIELPVPDKLPTSAKSFQIKLQYVGGVVHCVIFQTELCQGCTSCSTIQQGQ
QVSLEEDDVHWLHAISRTKLAGPHRRFGSNSGPKRAKLECKITILPLEPSQHRDPAIQVSGHSSNKENTWA