; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032963 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032963
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold11:15363532..15364210
RNA-Seq ExpressionSpg032963
SyntenySpg032963
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.6e-3140.76Show/hide
Query:  ESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR-----------------------------
        ESL DY+T FN+E LQVEG +  V+L+A   G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR                             
Subjt:  ESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR-----------------------------

Query:  --GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEF------TTKSEADQRWL
           D  +KFEKYT T+ P EQ+LMEI+N  LL  P ++ ++  KR K +YCLFH DHG++ ++    K+E+E LI  GYLKE+      T   E+D+   
Subjt:  --GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEF------TTKSEADQRWL

Query:  RPMITLQKGVI
        R + T+  G I
Subjt:  RPMITLQKGVI

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.4e-3942.67Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------
        +G R + +P   LLT+KQ+  ESLRDY+  FNEE LQVEG +  V+L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR        
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------

Query:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY
                                D  RKFEKYTPT+ P EQ+LMEI++  LL  P ++K++  KR K +YCLFHRDHG++ ++    K+E+E LIR GY
Subjt:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY

Query:  LKEF------TTKSEADQRWLRPMITLQKGVI
        LKE+      T   E+D+   R + T+  G I
Subjt:  LKEF------TTKSEADQRWLRPMITLQKGVI

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]1.6e-3641.98Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------
        +G R + +P   LLT+KQ+  ESL DY+  FN+E LQ+E  +  V+L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR        
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------

Query:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY
                                D  RKFEKYTPT+ P EQ+LMEI++  LL  P ++K    KR K +YCLFHRDH ++ ++Y   K+E+E LIR GY
Subjt:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY

Query:  LKEFTTKSEADQ
        L+E+  + +A Q
Subjt:  LKEFTTKSEADQ

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]8.0e-2833.94Show/hide
Query:  AREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSK---RGDYTR--
        AR++ KP   LLTVKQQ GE+LRDYI  +N E  QV+GY   +AL  I  GL   +L  S+ K  P +Y+E ++RA+KY +AEE  +++   +G+ T+  
Subjt:  AREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSK---RGDYTR--

Query:  ----------------------------------------KFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQP
                                                +F  +T  + P+EQILM+++N  L   P  +K+NP +R+ ++YC FH+DHG+      + 
Subjt:  ----------------------------------------KFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQP

Query:  KDEIEALIRNGYLKEFTTKSE
        K++IE+L+R G L+E+    E
Subjt:  KDEIEALIRNGYLKEFTTKSE

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]8.2e-3338.94Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKRG---DYTR
        +GAR+Q+ P    L VKQ   ESL+D IT FN+E ++VE YS  VAL  I  GL+  +   S+ K+  RT+ E +SRAQKY + +EL  +KRG   D  R
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKRG---DYTR

Query:  -------------------------------KFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIR
                                       +F +YTP + P+EQ+LM+I+N +LL  P+ +K  P++RD+S+YC +HRDH ++I +    K+EI++LI+
Subjt:  -------------------------------KFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIR

Query:  NGYLKEFTTKSEADQRWLRPMITLQK
         GYLKEF  K     R   P    QK
Subjt:  NGYLKEFTTKSEADQRWLRPMITLQK

TrEMBL top hitse value%identityAlignment
A0A2N9GH90 Ribonuclease H2.5e-2736.36Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL------------
        +GA+   +P  +LL +KQ+ GE+LR Y+T FN+E L V+G   +V L A  +GL+    L S+ K  P T  E +  AQ++M+ EE L            
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELL------------

Query:  ----RSKRGDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQR
            R+ RG +  +F  +TP + P + I M+I+N   L  P KL ++PDKR + +YC FHRDHG++  +    K +IE LI+ G L+ F  + + + R
Subjt:  ----RSKRGDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQR

A0A2N9HJ21 Ribonuclease H1.0e-2837.57Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRS-------KRG
        +GA+   +P  +LL +KQ+ GE+LR Y+T FN+E L V+G   +V L A  +GL+    L S+ K  P T  E +  AQ++M+ EE L +       KR 
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRS-------KRG

Query:  DYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQR
         +  +F  +TP + P + I M+I+N   L  P KL ++PDKR + +YC FHRDHG++  +    K +IE LI+ G L+ F  + + + R
Subjt:  DYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQR

A0A6J1CNT2 uncharacterized protein LOC1110128051.3e-3140.76Show/hide
Query:  ESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR-----------------------------
        ESL DY+T FN+E LQVEG +  V+L+A   G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR                             
Subjt:  ESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR-----------------------------

Query:  --GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEF------TTKSEADQRWL
           D  +KFEKYT T+ P EQ+LMEI+N  LL  P ++ ++  KR K +YCLFH DHG++ ++    K+E+E LI  GYLKE+      T   E+D+   
Subjt:  --GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEF------TTKSEADQRWL

Query:  RPMITLQKGVI
        R + T+  G I
Subjt:  RPMITLQKGVI

A0A6J1DWY0 uncharacterized protein LOC1110252931.7e-3942.67Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------
        +G R + +P   LLT+KQ+  ESLRDY+  FNEE LQVEG +  V+L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR        
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------

Query:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY
                                D  RKFEKYTPT+ P EQ+LMEI++  LL  P ++K++  KR K +YCLFHRDHG++ ++    K+E+E LIR GY
Subjt:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY

Query:  LKEF------TTKSEADQRWLRPMITLQKGVI
        LKE+      T   E+D+   R + T+  G I
Subjt:  LKEF------TTKSEADQRWLRPMITLQKGVI

A0A6J1DYL6 uncharacterized protein LOC1110257857.8e-3741.98Show/hide
Query:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------
        +G R + +P   LLT+KQ+  ESL DY+  FN+E LQ+E  +  V+L+A  +G+ DE L  S GK  P T++E +SRAQ+YMSA E   SKR        
Subjt:  MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKR--------

Query:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY
                                D  RKFEKYTPT+ P EQ+LMEI++  LL  P ++K    KR K +YCLFHRDH ++ ++Y   K+E+E LIR GY
Subjt:  -----------------------GDYTRKFEKYTPTSDPQEQILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGY

Query:  LKEFTTKSEADQ
        L+E+  + +A Q
Subjt:  LKEFTTKSEADQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAGCCAGGTGAGAGCTTACGTGATTATATAACATGTTTTAACGAGGAAGCACTTCA
GGTAGAAGGATACAGTGGTGAAGTGGCCCTGGTAGCCATAACCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCTGAAT
TTGTTTCCAGGGCCCAGAAGTACATGAGTGCAGAGGAGTTGCTTAGATCGAAGAGAGGAGACTACACAAGAAAGTTTGAGAAGTATACTCCTACATCAGACCCACAAGAG
CAAATCTTGATGGAAATTCAAAATACGAACCTACTCAATGTGCCTAGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCA
TGGATATTCAATTAGGAACTACATTCAGCCGAAGGACGAAATTGAAGCACTGATTCGGAACGGGTACCTGAAGGAGTTCACCACTAAGTCTGAGGCCGACCAGAGATGGC
TGAGGCCGATGATAACTCTCCAAAAGGGAGTTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAGCCAGGTGAGAGCTTACGTGATTATATAACATGTTTTAACGAGGAAGCACTTCA
GGTAGAAGGATACAGTGGTGAAGTGGCCCTGGTAGCCATAACCGCCGGACTGGAAGACGAGAGACTGCTTAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCTGAAT
TTGTTTCCAGGGCCCAGAAGTACATGAGTGCAGAGGAGTTGCTTAGATCGAAGAGAGGAGACTACACAAGAAAGTTTGAGAAGTATACTCCTACATCAGACCCACAAGAG
CAAATCTTGATGGAAATTCAAAATACGAACCTACTCAATGTGCCTAGAAAGCTGAAGTCAAATCCTGACAAAAGAGACAAAAGCCAGTATTGTCTCTTCCATCGAGATCA
TGGATATTCAATTAGGAACTACATTCAGCCGAAGGACGAAATTGAAGCACTGATTCGGAACGGGTACCTGAAGGAGTTCACCACTAAGTCTGAGGCCGACCAGAGATGGC
TGAGGCCGATGATAACTCTCCAAAAGGGAGTTATTTAG
Protein sequenceShow/hide protein sequence
MGAREQRKPHINLLTVKQQPGESLRDYITCFNEEALQVEGYSGEVALVAITAGLEDERLLNSIGKSQPRTYAEFVSRAQKYMSAEELLRSKRGDYTRKFEKYTPTSDPQE
QILMEIQNTNLLNVPRKLKSNPDKRDKSQYCLFHRDHGYSIRNYIQPKDEIEALIRNGYLKEFTTKSEADQRWLRPMITLQKGVI