; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg032965 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg032965
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold11:13783674..13786176
RNA-Seq ExpressionSpg032965
SyntenySpg032965
Gene Ontology termsGO:0007165 - signal transduction (biological process)
GO:0000155 - phosphorelay sensor kinase activity (molecular function)
InterPro domainsIPR003661 - Signal transduction histidine kinase, dimerisation/phosphoacceptor domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.0e-2131.63Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA------------GVMPTRTSRR
        LLTL+VL DNDA+V                    P      M          +     G + EDDVCWLHV+   K A            GVMP R+SRR
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA------------GVMPTRTSRR

Query:  GRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------------------
         RQN+D TQDPTQ QSERGSSTPR  N+ARSE FAR AQ                                                             
Subjt:  GRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------------------

Query:  ---------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSIIE
                                                                             EIRTP+TAIAKWT+FSQLVET LRVEQSI+E
Subjt:  ---------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSIIE

Query:  EKSTVEPSREAPTDSGFRGRELERMFQAVKTS
        EKS +E SR   T SG RG E  R    V  S
Subjt:  EKSTVEPSREAPTDSGFRGRELERMFQAVKTS

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-2132.73Show/hide
Query:  LLTLSVLRDNDAVVS---------AGRAPLHRRASKRWLYWACPTQRRFV----------MLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA---
        L TLSVLRDNDAVV             A      S  WL         FV           ++S    V     G    +  D+VCWLH +   K A   
Subjt:  LLTLSVLRDNDAVVS---------AGRAPLHRRASKRWLYWACPTQRRFV----------MLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA---

Query:  --GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------
          GVMP RTSRR RQNQD  QDPTQ QSERGSSTPR  N+A SE F R AQ                                                 
Subjt:  --GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------

Query:  ----------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSII
                                                                              EIRTP+TAIAKWTDFSQL+ET LRVEQSI+
Subjt:  ----------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSII

Query:  EEKSTVEPSREAPTDSGFRGRELERMFQAVKTS
        EEKS +E SR   T S  RGRE  R    V  S
Subjt:  EEKSTVEPSREAPTDSGFRGRELERMFQAVKTS

KAA0056353.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-2235.02Show/hide
Query:  GQQGSLEEDDVCWLHVISLTKLAG---------VMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEI-----------------
        G  G +  DDVCWLH +   K  G         VMP RTS+R RQNQDGTQDPTQ QSERGSSTPR  N+A SE F+R AQEI                 
Subjt:  GQQGSLEEDDVCWLHVISLTKLAG---------VMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEI-----------------

Query:  ------------------------------------------------------------------------------------------------RTPI
                                                                                                        RTP+
Subjt:  ------------------------------------------------------------------------------------------------RTPI

Query:  TAIAKWTDFSQLVETTLRVEQSIIEEKSTVEPSREAPTDSGFRGRELERMFQAVKTS
        TAI KW DFSQLVET LRVEQSI+EEKS +E SR   T SG RGRE  R    V  S
Subjt:  TAIAKWTDFSQLVETTLRVEQSIIEEKSTVEPSREAPTDSGFRGRELERMFQAVKTS

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.3e-2039.38Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLAG--------VMPTRTSRRGRQ
        PL TLSVLRDNDAV                       +      LS       +     G +  DDVCWLH I   K+ G             T ++  Q
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLAG--------VMPTRTSRRGRQ

Query:  NQDGTQDPT-QSQSERGSSTPRCLNQARSELFARFAQ--------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSIIEEKSTVE
         + G    +   QSERGSSTPR  N+A SE FAR AQ                          EIRT +T IAKW DFSQLVET LRVEQSI+EEKS +E
Subjt:  NQDGTQDPT-QSQSERGSSTPRCLNQARSELFARFAQ--------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSIIEEKSTVE

Query:  PSREAPTDSGFRGRELERMFQAVKTS
         SR   T SG RGRE  R    V  S
Subjt:  PSREAPTDSGFRGRELERMFQAVKTS

TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]1.3e-2042.64Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRASKRW--------------------------LYWAC----PTQRRFVMLLSKPRYVRAAPH----GQQGSLEEDDV
        L TLSVL DND VVSAGRA L +R   RW                            W+C       + FV L  KP  VRAA +    G  G +  DDV
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRASKRW--------------------------LYWAC----PTQRRFVMLLSKPRYVRAAPH----GQQGSLEEDDV

Query:  CWLHVISLTKLA-----GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIE
        C +H +   K A     GVMP RTSRR RQNQDGTQDPTQ QSE GSSTPR  N+A  E FAR AQEI  P  A     +    +E   ++E ++ +
Subjt:  CWLHVISLTKLA-----GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIE

TrEMBL top hitse value%identityAlignment
A0A5A7TPS6 Retrotrans_gag domain-containing protein6.2e-2142.64Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRASKRW--------------------------LYWAC----PTQRRFVMLLSKPRYVRAAPH----GQQGSLEEDDV
        L TLSVL DND VVSAGRA L +R   RW                            W+C       + FV L  KP  VRAA +    G  G +  DDV
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRASKRW--------------------------LYWAC----PTQRRFVMLLSKPRYVRAAPH----GQQGSLEEDDV

Query:  CWLHVISLTKLA-----GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIE
        C +H +   K A     GVMP RTSRR RQNQDGTQDPTQ QSE GSSTPR  N+A  E FAR AQEI  P  A     +    +E   ++E ++ +
Subjt:  CWLHVISLTKLA-----GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIE

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.1e-2132.73Show/hide
Query:  LLTLSVLRDNDAVVS---------AGRAPLHRRASKRWLYWACPTQRRFV----------MLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA---
        L TLSVLRDNDAVV             A      S  WL         FV           ++S    V     G    +  D+VCWLH +   K A   
Subjt:  LLTLSVLRDNDAVVS---------AGRAPLHRRASKRWLYWACPTQRRFV----------MLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA---

Query:  --GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------
          GVMP RTSRR RQNQD  QDPTQ QSERGSSTPR  N+A SE F R AQ                                                 
Subjt:  --GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------

Query:  ----------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSII
                                                                              EIRTP+TAIAKWTDFSQL+ET LRVEQSI+
Subjt:  ----------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSII

Query:  EEKSTVEPSREAPTDSGFRGRELERMFQAVKTS
        EEKS +E SR   T S  RGRE  R    V  S
Subjt:  EEKSTVEPSREAPTDSGFRGRELERMFQAVKTS

A0A5A7UKD3 DNA/RNA polymerases superfamily protein1.9e-2235.02Show/hide
Query:  GQQGSLEEDDVCWLHVISLTKLAG---------VMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEI-----------------
        G  G +  DDVCWLH +   K  G         VMP RTS+R RQNQDGTQDPTQ QSERGSSTPR  N+A SE F+R AQEI                 
Subjt:  GQQGSLEEDDVCWLHVISLTKLAG---------VMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEI-----------------

Query:  ------------------------------------------------------------------------------------------------RTPI
                                                                                                        RTP+
Subjt:  ------------------------------------------------------------------------------------------------RTPI

Query:  TAIAKWTDFSQLVETTLRVEQSIIEEKSTVEPSREAPTDSGFRGRELERMFQAVKTS
        TAI KW DFSQLVET LRVEQSI+EEKS +E SR   T SG RGRE  R    V  S
Subjt:  TAIAKWTDFSQLVETTLRVEQSIIEEKSTVEPSREAPTDSGFRGRELERMFQAVKTS

A0A5D3BSA6 Retrotrans_gag domain-containing protein9.6e-2231.63Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA------------GVMPTRTSRR
        LLTL+VL DNDA+V                    P      M          +     G + EDDVCWLHV+   K A            GVMP R+SRR
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLA------------GVMPTRTSRR

Query:  GRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------------------
         RQN+D TQDPTQ QSERGSSTPR  N+ARSE FAR AQ                                                             
Subjt:  GRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQ-------------------------------------------------------------

Query:  ---------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSIIE
                                                                             EIRTP+TAIAKWT+FSQLVET LRVEQSI+E
Subjt:  ---------------------------------------------------------------------EIRTPITAIAKWTDFSQLVETTLRVEQSIIE

Query:  EKSTVEPSREAPTDSGFRGRELERMFQAVKTS
        EKS +E SR   T SG RG E  R    V  S
Subjt:  EKSTVEPSREAPTDSGFRGRELERMFQAVKTS

A0A5D3DV36 Retrotrans_gag domain-containing protein6.2e-2142.64Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRASKRW--------------------------LYWAC----PTQRRFVMLLSKPRYVRAAPH----GQQGSLEEDDV
        L TLSVL DND VVSAGRA L +R   RW                            W+C       + FV L  KP  VRAA +    G  G +  DDV
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRASKRW--------------------------LYWAC----PTQRRFVMLLSKPRYVRAAPH----GQQGSLEEDDV

Query:  CWLHVISLTKLA-----GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIE
        C +H +   K A     GVMP RTSRR RQNQDGTQDPTQ QSE GSSTPR  N+A  E FAR AQEI  P  A     +    +E   ++E ++ +
Subjt:  CWLHVISLTKLA-----GVMPTRTSRRGRQNQDGTQDPTQSQSERGSSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTG
CCCTACACAACGTCGATTTGTCATGTTACTTTCCAAACCGCGTTATGTCAGGGCTGCACCCCATGGTCAACAGGGATCTTTAGAGGAGGACGATGTCTGTTGGCTTCACG
TCATCTCCCTGACTAAGCTAGCAGGAGTCATGCCAACACGAACCAGCAGACGAGGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAGAGTCAATCTGAAAGGGGA
TCCAGTACCCCGAGATGTCTGAATCAGGCAAGGAGTGAGCTGTTTGCTAGATTTGCACAGGAGATACGTACCCCGATTACCGCTATTGCCAAGTGGACGGATTTTTCCCA
GCTAGTAGAGACTACCTTACGTGTGGAGCAGAGTATAATAGAGGAAAAGTCGACAGTGGAGCCTAGTCGTGAAGCTCCAACAGATAGTGGTTTCCGAGGTCGTGAGCTGG
AGCGAATGTTTCAGGCCGTCAAGACTTCAAGTGTCGATCTGGTGGCCAGTCATCGAGGCAGCTGA
mRNA sequenceShow/hide mRNA sequence
TATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTG
CCCTACACAACGTCGATTTGTCATGTTACTTTCCAAACCGCGTTATGTCAGGGCTGCACCCCATGGTCAACAGGGATCTTTAGAGGAGGACGATGTCTGTTGGCTTCACG
TCATCTCCCTGACTAAGCTAGCAGGAGTCATGCCAACACGAACCAGCAGACGAGGCAGGCAGAATCAGGACGGGACGCAGGATCCTACCCAGAGTCAATCTGAAAGGGGA
TCCAGTACCCCGAGATGTCTGAATCAGGCAAGGAGTGAGCTGTTTGCTAGATTTGCACAGGAGATACGTACCCCGATTACCGCTATTGCCAAGTGGACGGATTTTTCCCA
GCTAGTAGAGACTACCTTACGTGTGGAGCAGAGTATAATAGAGGAAAAGTCGACAGTGGAGCCTAGTCGTGAAGCTCCAACAGATAGTGGTTTCCGAGGTCGTGAGCTGG
AGCGAATGTTTCAGGCCGTCAAGACTTCAAGTGTCGATCTGGTGGCCAGTCATCGAGGCAGCTGA
Protein sequenceShow/hide protein sequence
YIPLLTLSVLRDNDAVVSAGRAPLHRRASKRWLYWACPTQRRFVMLLSKPRYVRAAPHGQQGSLEEDDVCWLHVISLTKLAGVMPTRTSRRGRQNQDGTQDPTQSQSERG
SSTPRCLNQARSELFARFAQEIRTPITAIAKWTDFSQLVETTLRVEQSIIEEKSTVEPSREAPTDSGFRGRELERMFQAVKTSSVDLVASHRGS