CuGenDBv2

Gene ID	Spg033125
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ATP-dependent helicase/deoxyribonuclease subunit B
Genome location	scaffold5:601051..610031
RNA-Seq Expression	Spg033125
Synteny	Spg033125
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009555 - pollen development (biological process) GO:0005886 - plasma membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004137681.1 uncharacterized protein LOC101203220 [Cucumis sativus]

4.0e-81

86.59

Show/hide

Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS
        SRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S     G+         I  DTHPHIS
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILS+YILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

XP_008442331.1 PREDICTED: uncharacterized protein LOC103486235 isoform X1 [Cucumis melo]

1.9e-86

85.49

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Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCS-----------------IEVFLGLLT
        SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S                 ++   GLLT
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCS-----------------IEVFLGLLT

Query:  TFFSIDTDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        TFFSIDTDTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  TFFSIDTDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

XP_008442332.1 PREDICTED: uncharacterized protein LOC103486235 isoform X2 [Cucumis melo]

6.2e-82

87.71

Show/hide

Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS
        SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S     G+         I TDTHPHI+
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

XP_022157271.1 uncharacterized protein LOC111024020 isoform X1 [Momordica charantia]

2.0e-80

86.59

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Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGL---LTTFFSIDTDTHPHIS
        SRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS EVPMIDVHL  S     G+   +     I  DTHPHIS
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGL---LTTFFSIDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTLT ILSIYILQSSKDKLARFVRETVVE+SIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

XP_023541018.1 uncharacterized protein LOC111801222 [Cucurbita pepo subsp. pepo]

1.0e-79

85.47

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Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS
        SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSA+VPMIDVHL  S     G+         I  D+HPHIS
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        +QFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGL LT ILSIYILQSSK+KLARFVRETVVESSIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9R0 Uncharacterized protein

2.0e-81

86.59

Show/hide

Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS
        SRTVWHDMIGRHCPI+GVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S     G+         I  DTHPHIS
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILS+YILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

A0A1S3B5G0 uncharacterized protein LOC103486235 isoform X1

9.1e-87

85.49

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Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCS-----------------IEVFLGLLT
        SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S                 ++   GLLT
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCS-----------------IEVFLGLLT

Query:  TFFSIDTDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        TFFSIDTDTHPHI+KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  TFFSIDTDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

A0A1S3B641 uncharacterized protein LOC103486235 isoform X2

3.0e-82

87.71

Show/hide

Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS
        SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S     G+         I TDTHPHI+
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

A0A5A7TLX6 Uncharacterized protein

3.0e-82

87.71

Show/hide

Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS
        SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFL+PWLLVINRKSAEVPMIDVHL  S     G+         I TDTHPHI+
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFS---IDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTL+ ILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

A0A6J1DXJ6 uncharacterized protein LOC111024020 isoform X1

9.7e-81

86.59

Show/hide

Query:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGL---LTTFFSIDTDTHPHIS
        SRTVWHDMIGRHCPIF VNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKS EVPMIDVHL  S     G+   +     I  DTHPHIS
Subjt:  SRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGL---LTTFFSIDTDTHPHIS

Query:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE
        KQFWDQQHWPKH+LVRYTWEEQSEIDVTSGLYVLFGSGLTLT ILSIYILQSSKDKLARFVRETVVE+SIPGVGVAKVE
Subjt:  KQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G51610.1 unknown protein

1.2e-67

65.66

Show/hide

Query:  FVSSRFRL--IVRLFHICIFCLFQSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIE
        F+SS +R   IVR+  +  +    SRT WHD+IG+HCPIF VNREVL+PI KP+GYTG DPYKI FQVG EKFLI WLLVINRKS+EVPMIDV+L  S  
Subjt:  FVSSRFRL--IVRLFHICIFCLFQSRTVWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIE

Query:  VFLGLLTTFFSID---TDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVG
          LG+      +     +THP I KQFWD QHWPKH+LVRYTW+EQSEIDV+SG YVLFGS LT + +LSIY+LQSS++KLARFVRETVVESS   VG
Subjt:  VFLGLLTTFFSID---TDTHPHISKQFWDQQHWPKHILVRYTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVG

Sequences

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CDS sequence

Show/hide CDS sequence

TCCCCCGCCAGTCCAAAAGAGGGGGAAGAGGGAAAGCGATTCTGTAGAGTTCCAATTCTTCGAACGACTGGGCAAATCACCGTCGACGATGGAAGAACCTCCAATTCTGT
TGCTCCTGGTTTCGCTATTGTCGCTGATTCCGATTTCGCTGGCTTACAGGCCTGGAGACATCGTTCCGATGAGCAAGATGGGACAGTATCACTCGGTCCGTTTTCCTATT
CTCGTTTGTCGCTCACAAGTCTTCGCGGATGCTTGTTTGTATCTTCTCGTTTCCGATTAATTGTTCGTCTCTTTCACATATGCATATTTTGTTTATTTCAGTCGAGAACA
GTTTGGCACGATATGATCGGTCGACATTGTCCAATTTTTGGCGTCAATCGCGAGGTTTTGGTGCCTATACCGAAGCCGGTCGGCTACACGGGAGCTGATCCGTATAAAAT
ATCCTTTCAAGTGGGAAAAGAAAAGTTTCTTATCCCATGGCTTCTTGTGATAAATCGCAAAAGTGCAGAAGTCCCAATGATTGATGTCCACTTGGTATGTTCAATTGAAG
TTTTTCTCGGCCTTCTGACTACTTTCTTCTCAATAGACACTGATACTCATCCACATATTAGCAAACAATTCTGGGATCAACAACATTGGCCAAAGCATATCCTTGTCCGT
TATACATGGGAGGAGCAATCAGAGATTGACGTGACTTCCGGATTATATGTTTTGTTCGGATCAGGTCTCACACTGACTTTGATTCTGTCAATTTACATCTTGCAATCATC
GAAGGACAAGTTGGCAAGGTTTGTAAGAGAAACAGTAGTTGAAAGCAGCATTCCTGGCGTAGGAGTGGCAAAAGTTGAATAG

mRNA sequence

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Protein sequence

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SPASPKEGEEGKRFCRVPILRTTGQITVDDGRTSNSVAPGFAIVADSDFAGLQAWRHRSDEQDGTVSLGPFSYSRLSLTSLRGCLFVSSRFRLIVRLFHICIFCLFQSRT
VWHDMIGRHCPIFGVNREVLVPIPKPVGYTGADPYKISFQVGKEKFLIPWLLVINRKSAEVPMIDVHLVCSIEVFLGLLTTFFSIDTDTHPHISKQFWDQQHWPKHILVR
YTWEEQSEIDVTSGLYVLFGSGLTLTLILSIYILQSSKDKLARFVRETVVESSIPGVGVAKVE

Spg033125 (gene) of Sponge gourd (cylindrica) v1 genome