; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg033415 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033415
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUbiquitin-conjugating enzyme E2 variant 1D
Genome locationscaffold5:4893214..4895272
RNA-Seq ExpressionSpg033415
SyntenySpg033415
Gene Ontology termsGO:0006301 - postreplication repair (biological process)
GO:0070534 - protein K63-linked ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU39125.1 hypothetical protein TSUD_23040 [Trifolium subterraneum]2.1e-4884.68Show/hide
Query:  VPVMMYSKMGTTQC--LLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVN
        +PV M   + T  C  L S  +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+N
Subjt:  VPVMMYSKMGTTQC--LLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVN

Query:  MTCVNHETGVV
        MTCVNHETGVV
Subjt:  MTCVNHETGVV

KAB5552956.1 hypothetical protein DKX38_010267 [Salix brachista]1.9e-4987.62Show/hide
Query:  MYSKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNH
        M  ++G  +CL    VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNH
Subjt:  MYSKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNH

Query:  ETGVV
        ETGVV
Subjt:  ETGVV

KAG7028134.1 Ubiquitin-conjugating enzyme E2 variant 1D [Cucurbita argyrosperma subsp. argyrosperma]7.5e-5193.2Show/hide
Query:  SKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHET
        S + + +CLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHET
Subjt:  SKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHET

Query:  GVV
        GVV
Subjt:  GVV

XP_022144653.1 ubiquitin-conjugating enzyme E2 variant 1C [Momordica charantia]2.7e-4893.88Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV    F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

XP_022983154.1 ubiquitin-conjugating enzyme E2 variant 1C [Cucurbita maxima]2.7e-4893.88Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV    F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

TrEMBL top hitse value%identityAlignment
A0A0R0L6B4 UBC core domain-containing protein2.6e-4993.88Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNHETGVVS I F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

A0A2Z6NTG6 UBC core domain-containing protein9.9e-4984.68Show/hide
Query:  VPVMMYSKMGTTQC--LLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVN
        +PV M   + T  C  L S  +PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+N
Subjt:  VPVMMYSKMGTTQC--LLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVN

Query:  MTCVNHETGVV
        MTCVNHETGVV
Subjt:  MTCVNHETGVV

A0A5N5MFQ7 UBC core domain-containing protein9.0e-5087.62Show/hide
Query:  MYSKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNH
        M  ++G  +CL    VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNH
Subjt:  MYSKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNH

Query:  ETGVV
        ETGVV
Subjt:  ETGVV

A0A6J1J6I4 ubiquitin-conjugating enzyme E2 variant 1C1.3e-4893.88Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV    F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

I1L9H9 UBC core domain-containing protein1.5e-4988.89Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF-T
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVS I F  
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF-T

Query:  YNFCNALC
         +F   LC
Subjt:  YNFCNALC

SwissProt top hitse value%identityAlignment
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant1.8e-3163.74Show/hide
Query:  TVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV
        T+PRNF LLEELE GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LKL+CDKDYP+KPP+VRF +++N+ CVN + GVV
Subjt:  TVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV

Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A2.8e-4078.26Show/hide
Query:  ITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV
        + VPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YP+ PP+VRF +R+NM CVN ETGVV
Subjt:  ITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV

Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B9.6e-4179.35Show/hide
Query:  ITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV
        + VPRNFRLLEELERGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +EG+I+QLKLFC KDYP+ PP+VRF SR+NM CVN E GVV
Subjt:  ITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV

Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C6.6e-5089.8Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV    F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D1.1e-4994.62Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV

Arabidopsis top hitse value%identityAlignment
AT2G36060.1 MMS ZWEI homologue 34.7e-5189.8Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV    F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

AT2G36060.2 MMS ZWEI homologue 31.2e-4988.89Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN TVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV    F
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVSLISF

AT2G36060.3 MMS ZWEI homologue 31.4e-5092.55Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVS
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGV S
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVS

AT3G52560.1 ubiquitin E2 variant 1D-48.0e-5194.62Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV

AT3G52560.2 ubiquitin E2 variant 1D-42.0e-4993.62Show/hide
Query:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV
        S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN TVHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV
Subjt:  SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAACTAAGCTCAACAAATTGGGGACCGCAGATCCTTTTGAACAAGACAATTCTGATGTGCCGGTTATGATGTATTCCAAGATGGGCACAACTCAGTGTTTGCTTTC
CATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATA
TGCGTTCATGGACTGGCACCATTATTGGTCCACACAATACCGTACATGAAGGTAGAATTTATCAATTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCCCCAAGT
GTTCGTTTTCATTCAAGAGTCAATATGACATGCGTGAACCATGAAACTGGAGTGGTATCTCTGATTTCATTCACATATAATTTTTGCAATGCTCTGTGTAATCCTGTGCA
AGTTGAGCACATTTCAGGAAAGAACCAAAATCTTGATGATTTGCATTGCTTCATCGTTGATCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAACTAAGCTCAACAAATTGGGGACCGCAGATCCTTTTGAACAAGACAATTCTGATGTGCCGGTTATGATGTATTCCAAGATGGGCACAACTCAGTGTTTGCTTTC
CATCACAGTTCCTAGGAACTTCAGGTTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATA
TGCGTTCATGGACTGGCACCATTATTGGTCCACACAATACCGTACATGAAGGTAGAATTTATCAATTGAAGCTGTTCTGTGATAAAGATTACCCTGATAAGCCCCCAAGT
GTTCGTTTTCATTCAAGAGTCAATATGACATGCGTGAACCATGAAACTGGAGTGGTATCTCTGATTTCATTCACATATAATTTTTGCAATGCTCTGTGTAATCCTGTGCA
AGTTGAGCACATTTCAGGAAAGAACCAAAATCTTGATGATTTGCATTGCTTCATCGTTGATCAATAG
Protein sequenceShow/hide protein sequence
MVTKLNKLGTADPFEQDNSDVPVMMYSKMGTTQCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPS
VRFHSRVNMTCVNHETGVVSLISFTYNFCNALCNPVQVEHISGKNQNLDDLHCFIVDQ