CuGenDBv2

Gene ID	Spg033440
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transcription elongation factor B polypeptide 3 isoform X2
Genome location	scaffold5:370404..372900
RNA-Seq Expression	Spg033440
Synteny	Spg033440
Gene Ontology terms	GO:0008152 - metabolic process (biological process)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]

2.3e-08

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Query:  SGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGR
        S CGRK+ +EER G R  K+ +E GT  W+RDCLV AA + NP  FWRR  L++ V+     +N  GR  L +    +GR
Subjt:  SGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGR

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]

4.2e-18

49.09

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Query:  MGRMYIDRKFFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLY
        MG++ IDRK F +      RK+ +EER G   GK+ ++ GT  W+RDCLV AA  +N   FW+R RL+ A+IF+QVLEN +GR+ +LSLE FK R++ ++
Subjt:  MGRMYIDRKFFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLY

Query:  ILEGFKRGMG
        I EG  RG G
Subjt:  ILEGFKRGMG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KB99 Uncharacterized protein

5.3e-11

51.43

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Query:  IEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEGFK
        ++ GT   +RDCL  AA  +NP+ FW R  L  A+IF+QVLENARGR+ +LSLE FKG+++ ++I +G K
Subjt:  IEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEGFK

A0A0A0KGZ5 Uncharacterized protein

2.5e-08

47.95

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Query:  CGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQV-LENARGRYGLLSL
        CGRK+ +EE  G R GK+ +E G   W+ DCLV AA + NP GFW R  L+   IF+Q  LE  RG    L L
Subjt:  CGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQV-LENARGRYGLLSL

A0A0A0LY03 Uncharacterized protein

5.7e-13

43.18

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Query:  GCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEG
        G  RK+ +EER G + GK+ ++ GT+ W+ D L  AA      G W+R +LD  +IF+QVLEN   R+ ++SL+ FKGR++ ++I EG
Subjt:  GCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEG

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X2

1.1e-08

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Query:  SGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGR
        S CGRK+ +EER G R  K+ +E GT  W+RDCLV AA + NP  FWRR  L++ V+     +N  GR  L +    +GR
Subjt:  SGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGR

A0A5D3CQQ0 Uncharacterized protein

2.0e-18

49.09

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Query:  MGRMYIDRKFFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLY
        MG++ IDRK F +      RK+ +EER G   GK+ ++ GT  W+RDCLV AA  +N   FW+R RL+ A+IF+QVLEN +GR+ +LSLE FK R++ ++
Subjt:  MGRMYIDRKFFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLY

Query:  ILEGFKRGMG
        I EG  RG G
Subjt:  ILEGFKRGMG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G32080.1 purin-rich alpha 1

6.2e-04

25.26

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Query:  FFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEG
        +F L ++  GR + + E+  A    +++    I W  D        +  + F +  +LDS V ++ + EN RGR+  +S       RST+ +  G
Subjt:  FFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEG

AT2G32080.2 purin-rich alpha 1

6.2e-04

25.26

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Query:  FFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEG
        +F L ++  GR + + E+  A    +++    I W  D        +  + F +  +LDS V ++ + EN RGR+  +S       RST+ +  G
Subjt:  FFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEG

Sequences

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CDS sequence

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ATGGGGAGGATGTATATTGATCGGAAGTTCTTCCGTCTATGGAAGAGTGGGTGTGGGAGGAAGGTGGTGATGGAGGAGCGCAGAGGTGCAAGAGTAGGGAAAGTAGTGAT
TGAAAAAGGGACGATCATCTGGATTCGGGATTGTTTAGTAGTAGCGGCTAGAATAGATAATCCTAAAGGTTTTTGGAGGAGGGGAAGATTGGATTCTGCAGTCATCTTCT
ACCAAGTTTTAGAAAACGCAAGAGGTAGATATGGTCTTCTGTCTTTAGAGCCTTTCAAAGGTAGAAGATCAACTCTCTATATTCTAGAAGGGTTTAAAAGGGGGATGGGT
AACGACTTTGGGTTGCCGTCTTTCATTCTCATGATTAACTTTGCATATCTGTGTGGGGGAATTGATGAGGAAGGGGGAATCAAAGGTGAAGAGATCTTGATGAAGGAGCC
AAGAGGGTTGATATCAAATGTAAAAGAGGGAGATGAGCAAGTAGGAATGGAAGCGATGAAGATGGGAGTGGAAAGAAATATAAGTTCTGGGCCTTGGGACCCTGCTTTGG
GCGAGGAAGAATGCGGTTTAGACCCATCTATTGTTAGTTGCTCCGATGATGAGTCTTTCCTTTCTACTCTGTTCGCCACCGAATCGACTCCAATAAATATTCAGAGCTTA
TTCGTTGAAGAGGGAGTCGGGTTGGAAGAAGATCCGGTTGGGTTGAGGAAGCAACAGATGAAGGCTGGAGAAGAAAATCACTTGAGGCCGGCTATGAGCTCGATGCCGGA
AGAGAAGGAGAAGGCCGCAGGGGAAACCTCAAAAGCGAATCCGGAAAAGGGGATTGAAGAAATAAAGGCTTTGACACTCGAGGTGCAACAAAATCCCTTTCCAACGGAGA
CTCATTCTCATTCGATTGTTGAGGGGGTCCCTCATCATCGTTTCCCTAGTCAGTCCTATGTTTGTGGGGATGTCTGCGGGCGGGCAATTTGTGCGAGGTTCGTCTTCCTA
TTCTACTCCGAGATGTATCCTAGATTTGGCTCTTGGAGAGGGGGAATTGAGGGTCGGTCTTGGGAATGGGAGACTATTGCCTTGGTAGGTATTTATGCTATTTCGACTAA
GGATCCTAAGTCGAGTGCGACATCATCCGTTGTTAAGGGGAAAGAGCCTGGGGGAGGTGTGGGCAATGGGAAAAAGAAACTATTGAGAGAGTCGAAGAAACTAGATTGCT
TGGTTAACTATGAGAAGAAGAAAGCTTCCAAGTAA

mRNA sequence

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Protein sequence

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MGRMYIDRKFFRLWKSGCGRKVVMEERRGARVGKVVIEKGTIIWIRDCLVVAARIDNPKGFWRRGRLDSAVIFYQVLENARGRYGLLSLEPFKGRRSTLYILEGFKRGMG
NDFGLPSFILMINFAYLCGGIDEEGGIKGEEILMKEPRGLISNVKEGDEQVGMEAMKMGVERNISSGPWDPALGEEECGLDPSIVSCSDDESFLSTLFATESTPINIQSL
FVEEGVGLEEDPVGLRKQQMKAGEENHLRPAMSSMPEEKEKAAGETSKANPEKGIEEIKALTLEVQQNPFPTETHSHSIVEGVPHHRFPSQSYVCGDVCGRAICARFVFL
FYSEMYPRFGSWRGGIEGRSWEWETIALVGIYAISTKDPKSSATSSVVKGKEPGGGVGNGKKKLLRESKKLDCLVNYEKKKASK

Spg033440 (gene) of Sponge gourd (cylindrica) v1 genome