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Spg033535 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033535
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:3341772..3342359
RNA-Seq ExpressionSpg033535
SyntenySpg033535
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2635063.1 hypothetical protein PVAP13_2NG311303 [Panicum virgatum]4.2e-0930.15Show/hide
Query:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF
        ER  KVH Q +Q  +  +  +      YK A  K V             + W    EN  KLNVD ++     +   G +IR+H G+ I     F +   
Subjt:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF

Query:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAIN
         AP+AE  A+ +G+  A++ GC+++IV  DC+Q ++
Subjt:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAIN

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]1.5e-1130.07Show/hide
Query:  SFFVERNKKVHNQAIQLESTRSSWVKDYLKAYKEA-NSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSF
        + + +RN   H  ++   + R +W+  Y + Y +A  +K +    SS+        W P  +++ K+N D A +S   STG+GL+IR+H G ++ A++ F
Subjt:  SFFVERNKKVHNQAIQLESTRSSWVKDYLKAYKEA-NSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSF

Query:  TEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIV
          +      AEI+ I E +  A  +  ++L+VE+DC +AI +V
Subjt:  TEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIV

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]8.4e-1038.78Show/hide
Query:  SISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS
        SIS     Q W P P+N +K+NVD A+ S   S GVG VIR+  G+I+ A  +   +   A LAE +A+  G+  A+    S LI+E+DC++ + +V+
Subjt:  SISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS

XP_030479109.1 uncharacterized protein LOC115696344 [Cannabis sativa]7.6e-1132.37Show/hide
Query:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF
        +RN  VH + ++      +    YL+ ++  NS       SS +    +  W P PEN +KLNVD    S  +  G+G +IRN AG+++GA +     +F
Subjt:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF

Query:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS
        K+   E KA+F G+S+AK+       VE DC+  +N ++
Subjt:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS

XP_030939482.1 uncharacterized protein LOC115964280 [Quercus lobata]1.4e-0935.38Show/hide
Query:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF
        +RN  +H + +Q     +   +DYL  ++ A+S++V   PSS     NL SW P P N +KLN D A      ++GVG +IRN  GE++ A +       
Subjt:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF

Query:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEAD
         +  AEI A    V FA E G  +++VE D
Subjt:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEAD

TrEMBL top hitse value%identityAlignment
A0A5B7BI33 Uncharacterized protein (Fragment)9.1e-1036.75Show/hide
Query:  KDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKG
        + YL  Y EA  ++   +P S+S       W+P PE+ +KLNVD +W     S G+G VIR+  G +I       +    A  AE  A+F GV+FAKE G
Subjt:  KDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKG

Query:  CSKLIVEADCVQAINIV
           +++E+DC+  +N V
Subjt:  CSKLIVEADCVQAINIV

A0A6J1BQ49 uncharacterized protein LOC1110047867.4e-1230.07Show/hide
Query:  SFFVERNKKVHNQAIQLESTRSSWVKDYLKAYKEA-NSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSF
        + + +RN   H  ++   + R +W+  Y + Y +A  +K +    SS+        W P  +++ K+N D A +S   STG+GL+IR+H G ++ A++ F
Subjt:  SFFVERNKKVHNQAIQLESTRSSWVKDYLKAYKEA-NSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSF

Query:  TEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIV
          +      AEI+ I E +  A  +  ++L+VE+DC +AI +V
Subjt:  TEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIV

A0A803P9C5 Uncharacterized protein4.1e-1039.77Show/hide
Query:  WTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS
        W P PEN++KLNVD A  S  +  G+G+++RN AG+++GA +     +FK+   E KA+F G+S+AK+       VE DC+  +N ++
Subjt:  WTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS

A0A803QGD0 Uncharacterized protein3.7e-1132.37Show/hide
Query:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF
        +RN  VH + ++      +    YL+ ++  NS       SS +    +  W P PEN +KLNVD    S  +  G+G +IRN AG+++GA +     +F
Subjt:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF

Query:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS
        K+   E KA+F G+S+AK+       VE DC+  +N ++
Subjt:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS

A0A803QGT2 Uncharacterized protein2.0e-0930.22Show/hide
Query:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF
        +RN  +H + ++      +    Y+  Y+   S  V    S+ +   ++ SW P PEN++KLNVD A  S  +  G+G+++RN AG++  A ++    +F
Subjt:  ERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAGEIIGARTSFTEVDF

Query:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS
        K+   E KA+  G+S+AK        VE DC+  +N ++
Subjt:  KAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGAGAGAAGGAAGTTTGGAGGAATACCTGTAATCGAGTGTTCTTGGAGGAGAATTTCAATAGCTTCTTTGTTGAGAGAAACAAGAAAGTCCATAATCAAGCAATTCAGCT
AGAATCCACTCGAAGTAGTTGGGTGAAGGACTATCTTAAAGCATATAAAGAGGCAAATTCAAAAGTGGTAGATAAATTACCTTCCTCCATTTCCGATGATCATAATCTTC
AGAGTTGGACCCCTCATCCGGAGAATTCCTGGAAATTAAATGTCGATACTGCATGGAAGTCAGTCCCTGCTTCGACTGGAGTTGGATTAGTGATCAGGAATCATGCAGGA
GAGATTATAGGCGCGAGAACATCGTTCACAGAGGTGGATTTCAAAGCTCCCTTGGCTGAAATTAAAGCCATTTTCGAAGGAGTTAGTTTTGCTAAAGAGAAGGGATGTTC
TAAATTGATCGTTGAAGCTGATTGTGTCCAAGCCATTAACATTGTGTCAAAAATCACCAACATCTAG
mRNA sequenceShow/hide mRNA sequence
CGAGAGAAGGAAGTTTGGAGGAATACCTGTAATCGAGTGTTCTTGGAGGAGAATTTCAATAGCTTCTTTGTTGAGAGAAACAAGAAAGTCCATAATCAAGCAATTCAGCT
AGAATCCACTCGAAGTAGTTGGGTGAAGGACTATCTTAAAGCATATAAAGAGGCAAATTCAAAAGTGGTAGATAAATTACCTTCCTCCATTTCCGATGATCATAATCTTC
AGAGTTGGACCCCTCATCCGGAGAATTCCTGGAAATTAAATGTCGATACTGCATGGAAGTCAGTCCCTGCTTCGACTGGAGTTGGATTAGTGATCAGGAATCATGCAGGA
GAGATTATAGGCGCGAGAACATCGTTCACAGAGGTGGATTTCAAAGCTCCCTTGGCTGAAATTAAAGCCATTTTCGAAGGAGTTAGTTTTGCTAAAGAGAAGGGATGTTC
TAAATTGATCGTTGAAGCTGATTGTGTCCAAGCCATTAACATTGTGTCAAAAATCACCAACATCTAG
Protein sequenceShow/hide protein sequence
REKEVWRNTCNRVFLEENFNSFFVERNKKVHNQAIQLESTRSSWVKDYLKAYKEANSKVVDKLPSSISDDHNLQSWTPHPENSWKLNVDTAWKSVPASTGVGLVIRNHAG
EIIGARTSFTEVDFKAPLAEIKAIFEGVSFAKEKGCSKLIVEADCVQAINIVSKITNI