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Spg033576 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033576
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionreplication protein A 14 kDa subunit B-like
Genome locationscaffold5:4396026..4398018
RNA-Seq ExpressionSpg033576
SyntenySpg033576
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028115.1 Replication protein A 14 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]2.6e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]1.7e-3795.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDDNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_022943091.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]2.6e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.7e-3795.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

XP_023540224.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]1.3e-3794.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIY KSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

TrEMBL top hitse value%identityAlignment
A0A5D3DP16 Replication protein A 14 kDa subunit B2.4e-3792.05Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDIL
        MDTSNPSVFVNAELLRL+VGRRVRAVIQV SEG+GVI+GKSTDDNQI VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSF +L
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDIL

A0A6J1CTX6 replication protein A 14 kDa subunit B8.2e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTDDNQIIVKGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1FQS1 replication protein A 14 kDa subunit B-like1.3e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1J6J3 replication protein A 14 kDa subunit B-like1.4e-3794.19Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLR++VGRRVRAVIQVQSEG+GVIYGKSTDDNQI VKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

A0A6J1L034 replication protein A 14 kDa subunit B-like1.3e-3895.35Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTSNPSVFVNAELLRL+VGRRVRAVIQVQSEG+GVIYGKSTD+NQI+VKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B1.1e-2664.37Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDI
        MDTS+P+ FVN  LLR ++G++VRAVIQV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD+
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDI

Q9LXK1 Replication protein A 14 kDa subunit A3.2e-2359.77Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+PS FVN  LLR  +G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

Q9SDK9 Replication protein A 14 kDa subunit3.0e-2152.33Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS P+ FVN E+L++ VGRRVR V+Q Q E  G++ G+STD +Q+ +KG+   P+S +VE+IGIA+ +++IRA+V T+FG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein2.3e-2459.77Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+PS FVN  LLR  +G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein2.3e-2459.77Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD
        MDTS+PS FVN  LLR  +G++VR VIQV     G + GKSTDD QI+V+G SPP PL+ ++EVIGIA++D +IRA+ WTNFG++FD
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKG-SPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFD

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein7.6e-2864.37Show/hide
Query:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDI
        MDTS+P+ FVN  LLR ++G++VRAVIQV     G + GKSTDD QI+VKGSP  PL+ ++EVIGIA+TD +IRA+VWTNFGDSFD+
Subjt:  MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGGCTGCATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAATCCGAAGGCAGTGGAGTTAT
ATACGGTAAATCGACAGATGACAACCAAATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCTAAGTTTGTTGAAGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTGTGGACCAATTTCGGCGATTCATTTGACATTCTCTGGCAAGAAGGCTCGAGCCCTACCTTCGCCTCCCGTGACACGCTAAGTCGCCGATGTTTTCTTCAT
GTTCTTCTGAAGCTTCCAAGATTTATCATTCATACGGTATGGAACTTTTCAGGTTATTATAAGCCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGGCTGCATGTTGGAAGAAGAGTTCGGGCAGTGATTCAGGTACAATCCGAAGGCAGTGGAGTTAT
ATACGGTAAATCGACAGATGACAACCAAATTATTGTGAAAGGCTCCCCACCCTTTCCTCTTTCTAAGTTTGTTGAAGTCATTGGAATTGCTGATACTGACAAATCCATAC
GAGCTGATGTGTGGACCAATTTCGGCGATTCATTTGACATTCTCTGGCAAGAAGGCTCGAGCCCTACCTTCGCCTCCCGTGACACGCTAAGTCGCCGATGTTTTCTTCAT
GTTCTTCTGAAGCTTCCAAGATTTATCATTCATACGGTATGGAACTTTTCAGGTTATTATAAGCCTTTGTGA
Protein sequenceShow/hide protein sequence
MDTSNPSVFVNAELLRLHVGRRVRAVIQVQSEGSGVIYGKSTDDNQIIVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDILWQEGSSPTFASRDTLSRRCFLH
VLLKLPRFIIHTVWNFSGYYKPL