; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg033604 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033604
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationscaffold5:1869167..1869770
RNA-Seq ExpressionSpg033604
SyntenySpg033604
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]4.3e-4177.21Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSR
        MASSS +L SSL PARA T N QD R CLF IG SVRAN+SRART FRIQ AAKPPAG               VELPKVEPKF+APFLGFTKTAE+WNSR
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSR

Query:  ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Subjt:  ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]4.3e-4980.6Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASSS MLSSSLLPARAPT NRQDGRLCLF IGSVRANNSRAR PFR+QAAK PAG               VELPKVEPKFEAPFLGFTKTAE+WNSRAC
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        M+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]1.8e-4778.36Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASS+T+LSSSLLPARAP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG               VELPKV+PKFEAPFLGFTKTAE+WNSRA 
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]9.0e-4777.61Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASS+T+LSSSLLPA AP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG               VELPKV+PKFEAPFLGFTKTAE+WNSRA 
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]7.3e-4981.34Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASSS +LSSSLLPARAP  ++QDGRLCLF IGSVRANNSR+R PFR+QAAKPPAG               VELPKVEPKFEAPFLGFTKTAEVWNSRAC
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein2.1e-4177.21Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSR
        MASSS +L SSL PARA T N QD R CLF IG SVRAN+SRART FRIQ AAKPPAG               VELPKVEPKF+APFLGFTKTAE+WNSR
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSR

Query:  ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Subjt:  ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein1.5e-3975.74Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSR
        MASSS +L SSL PARA T N+QDGR  LF IG SVRANNSRAR  FR+Q AAKPPAG               VELPKVEPKFEAPFLGFTKTAE+WNSR
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIG-SVRANNSRARTPFRIQ-AAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSR

Query:  ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        ACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Subjt:  ACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic2.1e-4980.6Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASSS MLSSSLLPARAPT NRQDGRLCLF IGSVRANNSRAR PFR+QAAK PAG               VELPKVEPKFEAPFLGFTKTAE+WNSRAC
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        M+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic8.8e-4878.36Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASS+T+LSSSLLPARAP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG               VELPKV+PKFEAPFLGFTKTAE+WNSRA 
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic8.8e-4878.36Show/hide
Query:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        MASS+T+LSSSLLPARAP  +RQDGRLCLF +GSVRANN RAR PFR+QAAKPPAG               VELPKV+PKFEAPFLGFTKTAE+WNSRA 
Subjt:  MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic3.2e-2350Show/hide
Query:  SSTMLSSSLLPARAPTSNRQDGR---LCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        SS+ LSSSL    +  S    GR   LC           +R + PF ++AAK P G               V +PK +PK +  FLGFT+TAE+WNSRAC
Subjt:  SSTMLSSSLLPARAPTSNRQDGR---LCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIG F+VELILNKGIL++IGV++GKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein2.3e-2450Show/hide
Query:  SSTMLSSSLLPARAPTSNRQDGR---LCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC
        SS+ LSSSL    +  S    GR   LC           +R + PF ++AAK P G               V +PK +PK +  FLGFT+TAE+WNSRAC
Subjt:  SSTMLSSSLLPARAPTSNRQDGR---LCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRAC

Query:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
        MIGLIG F+VELILNKGIL++IGV++GKGLDLPL
Subjt:  MIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCAGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCATATTGGTTCTGTACGAGC
CAATAACAGCAGGGCTCGTACCCCTTTTAGGATTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCCGTCTATCCTCTTCAAATTTGTGGATTTTTCCCATTTCTGTTGAAT
TGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAGTCTGGAACTCCAGAGCCTGCATGATAGGCCTCATTGGGATTTTTGTAGTA
GAACTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCAGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCATATTGGTTCTGTACGAGC
CAATAACAGCAGGGCTCGTACCCCTTTTAGGATTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCCGTCTATCCTCTTCAAATTTGTGGATTTTTCCCATTTCTGTTGAAT
TGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAGTCTGGAACTCCAGAGCCTGCATGATAGGCCTCATTGGGATTTTTGTAGTA
GAACTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA
Protein sequenceShow/hide protein sequence
MASSSTMLSSSLLPARAPTSNRQDGRLCLFHIGSVRANNSRARTPFRIQAAKPPAGVRRLSSSNLWIFPISVELPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVV
ELILNKGILQVIGVDVGKGLDLPL