; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg033661 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033661
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like domain containing protein
Genome locationscaffold13:37954973..37956795
RNA-Seq ExpressionSpg033661
SyntenySpg033661
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKA48597.1 Putative ribonuclease H protein [Apostasia shenzhenica]2.1e-1133.73Show/hide
Query:  NDISNERYCISSEDVNSIV-IHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDR
        N I+NE   I +   +SI+ ++VD V DDKRG +G G V R S G+++A +       L P  AE  A+ ++  LAE++   NI I  DSL  I +++D 
Subjt:  NDISNERYCISSEDVNSIV-IHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDR

Query:  VFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTR
              ++  L  IKD      +    H  R  NK+AH LAR  L + +  +W+   P +I  + R
Subjt:  VFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.1e-1130.67Show/hide
Query:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI
        S+ ++ D  C  +     FG + R+S   LVAA   + P  LSPL AE + +LE L+ A   +  ++ + SDSL  I ++++ +    + Q  + +I+ +
Subjt:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI

Query:  CTRFRDVRFMHTFRNYNKIAHNLARKGLV--SSLNLWLDTFPNWISDMTR
           F  + F H+ R  N+ AH LA+ G+   S+   WL  FP W+ D+ +
Subjt:  CTRFRDVRFMHTFRNYNKIAHNLARKGLV--SSLNLWLDTFPNWISDMTR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.9e-0451.06Show/hide
Query:  SPTWRSKYYSNTSILQVDAKASSSYFWKGFVWGKELLKKGLRKNLDN
        S   + KY+ +TS+LQ    + SSYFWKGF+WG++LL KGLR  + N
Subjt:  SPTWRSKYYSNTSILQVDAKASSSYFWKGFVWGKELLKKGLRKNLDN

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.5e-1131.79Show/hide
Query:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI
        +I I+ D   D +R  +G G + RNS G ++A +  +    L P   E  A  +++ L E+L++K++ I  DS+  I M +D           +  +K+ 
Subjt:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI

Query:  CTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCE
           F   +  H  R+ N++AHNLAR  L  +S  +WL+ FP +I++MTR E
Subjt:  CTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCE

XP_042972974.1 uncharacterized protein LOC122304774 [Carya illinoinensis]1.0e-1031.88Show/hide
Query:  MIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRN
        M G GA+FR+SKG+++ +   +  S+++ +  EA A+L  L+    L I+N+VI SDSL ++     +  +      ++ D K++ TRF   +  H  R+
Subjt:  MIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRN

Query:  YNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCEKS
         N   H+LA+ GL V +++LW   +P+ IS++   + S
Subjt:  YNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCEKS

XP_042988698.1 uncharacterized protein LOC122316231 [Carya illinoinensis]1.2e-1128.12Show/hide
Query:  WKGFVWGKELLKKGLRKNLDN---DISNERYCISSEDVNSIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAER
        WK  +W  +L  K   K L +    +  ++    S       ++VD        + G GA+ R+SKG+++ +   +  S++  +  EA A+L  L+    
Subjt:  WKGFVWGKELLKKGLRKNLDN---DISNERYCISSEDVNSIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAER

Query:  LDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCEKS
        L I N++I SDSL ++     +  +      ++ + K++ TRF      H  R+YNK AH+LA+ GL V ++NLW   +P+ IS++   + S
Subjt:  LDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCEKS

TrEMBL top hitse value%identityAlignment
A0A2C9VPF8 RNase H domain-containing protein3.5e-1234.65Show/hide
Query:  GMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFR
        GM+GF  VFRN++G+++A+V G +         EAKA+L  L+LA  L    +V+ SD L +I  L+  VF+  E+  +L D   I        + H  R
Subjt:  GMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFR

Query:  NYNKIAHNLARKGLVSSLNLWLDTFPN
        + NK+ H LAR  ++S  ++W+   P+
Subjt:  NYNKIAHNLARKGLVSSLNLWLDTFPN

A0A2H9ZZA9 Ribonuclease H protein1.0e-1133.73Show/hide
Query:  NDISNERYCISSEDVNSIV-IHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDR
        N I+NE   I +   +SI+ ++VD V DDKRG +G G V R S G+++A +       L P  AE  A+ ++  LAE++   NI I  DSL  I +++D 
Subjt:  NDISNERYCISSEDVNSIV-IHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDR

Query:  VFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTR
              ++  L  IKD      +    H  R  NK+AH LAR  L + +  +W+   P +I  + R
Subjt:  VFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTR

A0A2I0AN33 Ribonuclease H protein1.7e-1131.79Show/hide
Query:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI
        +I I+ D   D +R  +G G + RNS G ++A +  +    L P   E  A  +++ L E+L++K++ I  DS+  I M +D           +  +K+ 
Subjt:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI

Query:  CTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCE
           F   +  H  R+ N++AHNLAR  L  +S  +WL+ FP +I++MTR E
Subjt:  CTRFRDVRFMHTFRNYNKIAHNLARKGL-VSSLNLWLDTFPNWISDMTRCE

A0A6J1DX30 uncharacterized protein LOC1110248741.0e-1130.67Show/hide
Query:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI
        S+ ++ D  C  +     FG + R+S   LVAA   + P  LSPL AE + +LE L+ A   +  ++ + SDSL  I ++++ +    + Q  + +I+ +
Subjt:  SIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDI

Query:  CTRFRDVRFMHTFRNYNKIAHNLARKGLV--SSLNLWLDTFPNWISDMTR
           F  + F H+ R  N+ AH LA+ G+   S+   WL  FP W+ D+ +
Subjt:  CTRFRDVRFMHTFRNYNKIAHNLARKGLV--SSLNLWLDTFPNWISDMTR

A0A6J1DX30 uncharacterized protein LOC1110248749.1e-0551.06Show/hide
Query:  SPTWRSKYYSNTSILQVDAKASSSYFWKGFVWGKELLKKGLRKNLDN
        S   + KY+ +TS+LQ    + SSYFWKGF+WG++LL KGLR  + N
Subjt:  SPTWRSKYYSNTSILQVDAKASSSYFWKGFVWGKELLKKGLRKNLDN

A0A6J1DX30 uncharacterized protein LOC1110248741.7e-1137.01Show/hide
Query:  GFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYN
        G+GAV RN +GDL+AA       + S +  E  AMLE L L +++  +++V+ SD+  LIS+L+       EV  +L DI+ +   F  + F+   R  N
Subjt:  GFGAVFRNSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYN

Query:  KIAHNLARKG-LVSSLNLWLDTFPNWI
         +AH+LARKG L+    +WL+  P W+
Subjt:  KIAHNLARKG-LVSSLNLWLDTFPNWI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein2.1e-0629.79Show/hide
Query:  NSIVIHVDVVCDDKRGMIGFGAVFR---NSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWD
        +  + +VD     +  + G G VF+   +S+ ++     G      SPL AEA A+  ++  A +L+  ++++LSDS  ++  L   V +  E+  LL +
Subjt:  NSIVIHVDVVCDDKRGMIGFGAVFR---NSKGDLVAAVHGQNPSLLSPLCAEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWD

Query:  IKDICTRFRDVRFMHTFRNYNKIAHNLARKGLVSSLNLWLD
        I+ I  RFR + F    R  N IA   A+  L  S N+ LD
Subjt:  IKDICTRFRDVRFMHTFRNYNKIAHNLARKGLVSSLNLWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCGCCAACTTGGAGAAGCAAATACTATTCCAATACCTCCATTCTTCAAGTCGATGCTAAGGCATCTTCTTCGTACTTCTGGAAGGGCTTTGTATGGGGGAAAGA
ACTATTAAAAAAGGGGTTAAGGAAGAACCTTGACAATGACATTTCTAATGAGAGGTACTGCATTAGCAGTGAGGATGTTAATTCAATCGTTATTCATGTTGATGTTGTGT
GTGATGATAAGCGTGGGATGATTGGTTTTGGGGCGGTCTTTCGGAATAGCAAGGGAGATTTGGTGGCAGCAGTACATGGCCAAAATCCATCCTTGTTATCCCCTTTGTGT
GCGGAAGCAAAAGCGATGCTAGAAAGTCTTCGTCTTGCCGAGAGATTGGATATAAAAAATATAGTTATTCTATCAGACTCTCTGGGTCTGATCTCAATGCTCAAGGACAG
GGTGTTTGCAGCTGTTGAGGTTCAGACATTACTATGGGATATCAAGGATATTTGTACTCGGTTCCGTGATGTGAGATTCATGCATACTTTTAGGAATTATAACAAGATAG
CTCATAATCTGGCTCGTAAAGGTCTGGTTTCTTCTCTGAACCTTTGGTTGGATACCTTTCCAAATTGGATTTCTGATATGACTCGTTGTGAGAAGTCTTGGTTTGTACCC
CTTGAGGGATTTTCAAATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATCGCCAACTTGGAGAAGCAAATACTATTCCAATACCTCCATTCTTCAAGTCGATGCTAAGGCATCTTCTTCGTACTTCTGGAAGGGCTTTGTATGGGGGAAAGA
ACTATTAAAAAAGGGGTTAAGGAAGAACCTTGACAATGACATTTCTAATGAGAGGTACTGCATTAGCAGTGAGGATGTTAATTCAATCGTTATTCATGTTGATGTTGTGT
GTGATGATAAGCGTGGGATGATTGGTTTTGGGGCGGTCTTTCGGAATAGCAAGGGAGATTTGGTGGCAGCAGTACATGGCCAAAATCCATCCTTGTTATCCCCTTTGTGT
GCGGAAGCAAAAGCGATGCTAGAAAGTCTTCGTCTTGCCGAGAGATTGGATATAAAAAATATAGTTATTCTATCAGACTCTCTGGGTCTGATCTCAATGCTCAAGGACAG
GGTGTTTGCAGCTGTTGAGGTTCAGACATTACTATGGGATATCAAGGATATTTGTACTCGGTTCCGTGATGTGAGATTCATGCATACTTTTAGGAATTATAACAAGATAG
CTCATAATCTGGCTCGTAAAGGTCTGGTTTCTTCTCTGAACCTTTGGTTGGATACCTTTCCAAATTGGATTTCTGATATGACTCGTTGTGAGAAGTCTTGGTTTGTACCC
CTTGAGGGATTTTCAAATCTTTAA
Protein sequenceShow/hide protein sequence
MKSPTWRSKYYSNTSILQVDAKASSSYFWKGFVWGKELLKKGLRKNLDNDISNERYCISSEDVNSIVIHVDVVCDDKRGMIGFGAVFRNSKGDLVAAVHGQNPSLLSPLC
AEAKAMLESLRLAERLDIKNIVILSDSLGLISMLKDRVFAAVEVQTLLWDIKDICTRFRDVRFMHTFRNYNKIAHNLARKGLVSSLNLWLDTFPNWISDMTRCEKSWFVP
LEGFSNL