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Spg033710 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033710
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSANT domain-containing protein
Genome locationscaffold13:38883049..38885671
RNA-Seq ExpressionSpg033710
SyntenySpg033710
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]1.5e-3183.91Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS------NFLDEEQR
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVHNIETG++PLPNYS      NFLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS------NFLDEEQR

XP_022997502.1 protein RADIALIS-like 4 [Cucurbita maxima]3.6e-3080Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS---------NFLDEEQR
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYE+LVEDVHNIETGR+PLPNYS          FLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS---------NFLDEEQR

XP_023002559.1 protein RADIALIS-like 4 [Cucurbita maxima]8.7e-3285.39Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPN--------YSNFLDEEQR
        SSSSSSSNVW+SKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYE+LVEDVHNIE GRIPLPN        YSNFLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPN--------YSNFLDEEQR

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]4.3e-3181.82Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS-------NFLDEEQR
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVHNIETG++PLPNYS       NF+DEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS-------NFLDEEQR

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]2.1e-3081.61Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS------NFLDEEQR
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLA A+GGKTAEEVK HY++LVEDVHNIETGR+PLPNYS      NFLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS------NFLDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein6.5e-3382.42Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS-------NFLDEEQRQSL
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVHNIETG++PLPNYS       NF+DEEQRQSL
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS-------NFLDEEQRQSL

A0A1S3BBR2 protein RADIALIS-like 47.2e-3283.91Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS------NFLDEEQR
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYE+LVEDVHNIETG++PLPNYS      NFLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS------NFLDEEQR

A0A6J1CRB5 protein RADIALIS-like 3 isoform X11.1e-2976.34Show/hide
Query:  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPN-----YSNFLDEEQR-QSLSL
        M SSSSSS++W+SKQNKLFENALTVYDK+SP+RWQ LARAVGGKTAEEVK HY++LVEDVHNIE+GR+PLPN     YSNFL+E+QR +SL L
Subjt:  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPN-----YSNFLDEEQR-QSLSL

A0A6J1K580 protein RADIALIS-like 41.8e-3080Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS---------NFLDEEQR
        SSSSSSS+ W+SKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYE+LVEDVHNIETGR+PLPNYS          FLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYS---------NFLDEEQR

A0A6J1KQS6 protein RADIALIS-like 44.2e-3285.39Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPN--------YSNFLDEEQR
        SSSSSSSNVW+SKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYE+LVEDVHNIE GRIPLPN        YSNFLDEEQR
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPN--------YSNFLDEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.5e-2265.28Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY
        S SS SS  WT+KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYELLV+D+++IE G +P PNY
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY

Q1A173 Protein RADIALIS-like 64.1e-2469.33Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNF
        S+S SS + WT  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ NIETGR+PLPNY  F
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNF

Q1G3C4 Protein RADIALIS-like 41.9e-2164Show/hide
Query:  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSN
        M+SSS S++ WT++++K FE AL  +DKD+PDRWQK+ARAVGGK+ EEVKRHYELL+ DV++IE+GR P P Y N
Subjt:  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSN

Q6NNN0 Protein RADIALIS-like 38.5e-2268.06Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY
        S+S SSS  WT K+NKLFE AL  YD+D+PDRW  +ARAVGGK+AEEV+RHYELL+ DV++IE+GR P PNY
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY

Q8GW75 Protein RADIALIS-like 51.0e-2270.83Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY
        SSS SSS+ WTSKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 57.1e-2470.83Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY
        SSS SSS+ WTSKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED+ NIE   +PLP Y
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY

AT1G75250.1 RAD-like 62.9e-2569.33Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNF
        S+S SS + WT  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ NIETGR+PLPNY  F
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNF

AT1G75250.2 RAD-like 62.9e-2569.33Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNF
        S+S SS + WT  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED+ NIETGR+PLPNY  F
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNF

AT2G18328.1 RAD-like 41.3e-2264Show/hide
Query:  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSN
        M+SSS S++ WT++++K FE AL  +DKD+PDRWQK+ARAVGGK+ EEVKRHYELL+ DV++IE+GR P P Y N
Subjt:  MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSN

AT4G39250.1 RAD-like 16.0e-2365.28Show/hide
Query:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY
        S SS SS  WT+KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYELLV+D+++IE G +P PNY
Subjt:  SSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTTCATCTTCAAGCTCGAACGTGTGGACTTCAAAGCAAAACAAGCTGTTCGAGAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCT
GGCGAGAGCCGTCGGCGGAAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGCTGCTGGTGGAGGACGTCCACAATATTGAGACCGGCAGAATTCCTTTGCCCAATTACT
CTAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTCTCTCTCTCTTTTTCTATTCAATCTATTTGGGATTGAAGGGTCTAAAGCTACAATGATATTGCAACAACAAACA
AGATTGAAGCGGTGGAAATGGGGGTGGCAACGAAGAGAAGAAAAGGGGATGGAAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGGGGAAGATGGGAGGGGTGGGGGA
AGAGTTTGTTGAGGAAAAGAAGAAAATGAGAAGGGTGGCGCAGTGGTTGTCGATGATGAAGAAGAAAGCAACGGCAGCGGCGGCAACCGACGAGAAGAGGAGAGAGAGGA
ATCGATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTTCATCTTCAAGCTCGAACGTGTGGACTTCAAAGCAAAACAAGCTGTTCGAGAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCT
GGCGAGAGCCGTCGGCGGAAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGCTGCTGGTGGAGGACGTCCACAATATTGAGACCGGCAGAATTCCTTTGCCCAATTACT
CTAACTTTCTTGATGAAGAACAAAGGCAATCTCTCTCTCTCTCTCTTTTTCTATTCAATCTATTTGGGATTGAAGGGTCTAAAGCTACAATGATATTGCAACAACAAACA
AGATTGAAGCGGTGGAAATGGGGGTGGCAACGAAGAGAAGAAAAGGGGATGGAAAAAATGGGGGTGGGGGAGGGTTTGTTGAGGAAGGGGAAGATGGGAGGGGTGGGGGA
AGAGTTTGTTGAGGAAAAGAAGAAAATGAGAAGGGTGGCGCAGTGGTTGTCGATGATGAAGAAGAAAGCAACGGCAGCGGCGGCAACCGACGAGAAGAGGAGAGAGAGGA
ATCGATGGTAG
Protein sequenceShow/hide protein sequence
MSSSSSSSNVWTSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYELLVEDVHNIETGRIPLPNYSNFLDEEQRQSLSLSLFLFNLFGIEGSKATMILQQQT
RLKRWKWGWQRREEKGMEKMGVGEGLLRKGKMGGVGEEFVEEKKKMRRVAQWLSMMKKKATAAAATDEKRRERNRW