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Spg033740 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033740
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSm protein F
Genome locationscaffold13:38699080..38701214
RNA-Seq ExpressionSpg033740
SyntenySpg033740
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3452786.1 hypothetical protein FNV43_RR03219 [Rhamnella rubrinervis]9.2e-4097.65Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIE+AERD
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

KAF5194306.1 Small nuclear ribonucleoprotein f [Thalictrum thalictroides]1.2e-3988.3Show/hide
Query:  FFLIISEPCIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        F+ +IS+  +PVNPKPFLNNLTGK V+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEEA+RD
Subjt:  FFLIISEPCIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]4.1e-4098.82Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIE+AERD
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]3.5e-3996.47Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIE+ ER+
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

XP_022961705.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]3.5e-3997.65Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIE+AERD
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F2.0e-4098.82Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIE+AERD
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

A0A5D3DWN8 Sm protein F2.0e-4098.82Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIE+AERD
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

A0A6J1CSK0 Sm protein F1.7e-3996.47Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIE+ ER+
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

A0A6J1KQT2 Sm protein F1.7e-3997.65Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIE+AERD
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

A0A7J6WA49 Sm protein F5.8e-4088.3Show/hide
Query:  FFLIISEPCIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        F+ +IS+  +PVNPKPFLNNLTGK V+VKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEEA+RD
Subjt:  FFLIISEPCIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F3.3e-3279.49Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        +P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

P62307 Small nuclear ribonucleoprotein F3.3e-3279.49Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        +P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

P62321 Small nuclear ribonucleoprotein F3.3e-3279.49Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        +P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F3.3e-3279.49Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        +P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F1.6e-3988.24Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+E+A++D
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein8.1e-2685.25Show/hide
Query:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+E+A++D
Subjt:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

AT2G43810.1 Small nuclear ribonucleoprotein family protein7.1e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein7.1e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F1.2e-4088.24Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+E+A++D
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD

AT4G30220.2 small nuclear ribonucleoprotein F1.2e-4088.24Show/hide
Query:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD
        IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+E+A++D
Subjt:  IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCCTGCAATCCATTACCCGGCCCAGATTACCCAATTCCCTCAGCCGCCGAAAACTCGCGGATATTCAACGAAAGGGAAAAAGGAGGGAAAACAAACCCTAGAGA
GAGAGAGAGAGCGCCATTTTCATCGTGTCCCTGTTCTTTCGAGCCTCCACAGATTCCAGAGAAGTTCTTCCTGATCATTTCGGAACCATGCATCCCAGTTAACCCGAAAC
CGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGCTTGCC
AATACCGAGGAATATATTGATGGACAGTTTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGATGAAGAAATCGA
AGAAGCCGAGCGTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCCCTGCAATCCATTACCCGGCCCAGATTACCCAATTCCCTCAGCCGCCGAAAACTCGCGGATATTCAACGAAAGGGAAAAAGGAGGGAAAACAAACCCTAGAGA
GAGAGAGAGAGCGCCATTTTCATCGTGTCCCTGTTCTTTCGAGCCTCCACAGATTCCAGAGAAGTTCTTCCTGATCATTTCGGAACCATGCATCCCAGTTAACCCGAAAC
CGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGCTTGCC
AATACCGAGGAATATATTGATGGACAGTTTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGATGAAGAAATCGA
AGAAGCCGAGCGTGACTAG
Protein sequenceShow/hide protein sequence
MGPCNPLPGPDYPIPSAAENSRIFNEREKGGKTNPRERERAPFSSCPCSFEPPQIPEKFFLIISEPCIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLA
NTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEEAERD