CuGenDBv2

Gene ID	Spg033778
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal RNA small subunit methyltransferase A
Genome location	scaffold13:33449505..33453353
RNA-Seq Expression	Spg033778
Synteny	Spg033778
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6585342.1 hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-79

92.9

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEPHGPGF SDD+TDNSFAVLVPCYGR+YNDFVD+TKNSILSA GNINDSFSA+
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-79

94.16

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVD+TKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSA

XP_022132233.1 uncharacterized protein LOC111005141 isoform X2 [Momordica charantia]

2.0e-79

94.19

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVD+TKNSILSAVGNINDSFSAD
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]

6.8e-80

93.55

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVD+TKNSILSA GNINDSFSA+
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]

4.0e-80

93.55

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVD+TKNSILSA GNINDSFSA+
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BB05 uncharacterized protein LOC103488121

3.6e-79

93.59

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Query:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPR+SN GSALNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        GWSEPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVD+TKNSILSA+GNINDSFSA+
Subjt:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

A0A6J1BRV5 uncharacterized protein LOC111005141 isoform X1

4.7e-79

94.16

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSA
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVD+TKNSILSAVGNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSA

A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X2

9.5e-80

94.19

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVD+TKNSILSAVGNINDSFSAD
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

A0A6J1GID2 uncharacterized protein LOC111454487

3.3e-80

93.55

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVD+TKNSILSA GNINDSFSA+
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

A0A6J1KME1 uncharacterized protein LOC111495931

1.9e-80

93.55

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVD+TKNSILSA GNINDSFSA+
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38060.1 unknown protein

2.7e-10

51.47

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Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNI
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +   +  N +LSAV N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNI

AT4G38060.2 unknown protein

1.6e-10

Show/hide

Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +   +  N +LSAV N+ +    D
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSAD

AT5G65480.1 unknown protein

1.4e-14

34.48

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSAL--NASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS
        M+V+FP+L  WL  G + + R    S    ++SL  ++++  T K       + SSS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSAL--NASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILS
        IGW EPHGPGF+++DD    F VLVP Y ++ +   +   N   S
Subjt:  IGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACATCTAATGGATCTGCTCTAAATGCTTCACTAGATACAGCCATTCG
GGAACCGGATACTCTGAAATTTCCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCTGGGTCTGAATCTGATGATTCAGATTGGTCGATTGGATGGTCGGAACCCCATGGACCTGGATTCCAG
AGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCATGTTATGGACGCATTTATAATGATTTTGTGGACGATACTAAGAACAGTATCCTTAGTGCTGTTGGAAA
CATCAACGATAGCTTTTCTGCCGATTTATGTAGTAGAATGATGAGGAAAGATCTCTTGAATGCCATGATTTCTGGTGTAAGTAAAGAATCTCCGGACATGGAGGAACCAT
TAGGTCAAATGGCTGCTGCTTCTCCATGA

mRNA sequence

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Protein sequence

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MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDDTDNSFAVLVPCYGRIYNDFVDDTKNSILSAVGNINDSFSADLCSRMMRKDLLNAMISGVSKESPDMEEPLGQMAAASP

Spg033778 (gene) of Sponge gourd (cylindrica) v1 genome