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Spg033810 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033810
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold13:34987175..34992485
RNA-Seq ExpressionSpg033810
SyntenySpg033810
Gene Ontology termsGO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OVA03013.1 Endonuclease/exonuclease/phosphatase [Macleaya cordata]1.1e-2924.38Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWV-TGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCS
        +WD  ++N  + ++G  S+SIK   +  +  WV T  Y P    GR  FW EL  +       WCI  DFN +   +E+   G   ++ K  N ++   +
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWV-TGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCS

Query:  FFDPPLSNGRFTWSNSR---ARSRIDRALCSKGWMDTFHGVRQSLDI------------SYGIHQVVCLQIERTFFPINAFR-----------RCFSLLR
          D PL+ G FTWS+ +      R+DR L S  W   +  V Q L              + GI +V         + +N  R             ++LL 
Subjt:  FFDPPLSNGRFTWSNSR---ARSRIDRALCSKGWMDTFHGVRQSLDI------------SYGIHQVVCLQIERTFFPINAFR-----------RCFSLLR

Query:  EV----------------------ELC---------------------TPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWN
        ++                      +LC                      PS +    W   H  + TLD LS + +S+     C  C+   ED++H+  +
Subjt:  EV----------------------ELC---------------------TPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWN

Query:  CAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVTRLFCNYSLG
        C +A+ +W  F  S G+ +   R L E++E +        + K +W     AI+W LW ERN R F   E    ++   VK  + LW     +F      
Subjt:  CAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVTRLFCNYSLG

Query:  LIILDW
         ++  W
Subjt:  LIILDW

VVA41200.1 PREDICTED: RNA-directed DNA polymerase, partial [Prunus dulcis]2.5e-2945.45Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF
        MW+  + +  +  +G FSVSI+I        W++G YGP  P+ R+ FW EL  L+GLCG+ WCI GDFNVV   SEK++GGR + S+K+FN++I+D + 
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF

Query:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS
         DP L N  FTWSN R  +   R+DR L S+ W D+F  V+ +
Subjt:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS

XP_016900613.1 PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]3.0e-3049.58Show/hide
Query:  EDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVT
        EDLDH+L + A A  +WD F  +FGL +ARHR +   IEEFL + P  E+G+FLW+A +CAI+W LW E N R F G+ER   E+W +++Y+VSLW S++
Subjt:  EDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVT

Query:  RLFCNYSLGLIILDWSPFI
        + FCNY L +I+  W+ F+
Subjt:  RLFCNYSLGLIILDWSPFI

XP_028075126.1 uncharacterized protein LOC114277426 [Camellia sinensis]7.1e-3246.53Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF
        MWD   V+  EV++GVFS+SIK + +D    W+TG YGP RP  RQ++W+EL  L+GLC  +WC+  DFNVV   SEK +G   ++S++ F+ +I +C  
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF

Query:  FDPPLSNGRFTWSN---SRARSRIDRALCSKGWMDTFHGVRQSL
         DPPLSN RFTWSN   +R   R+DR L + GW + F  +R+ +
Subjt:  FDPPLSNGRFTWSN---SRARSRIDRALCSKGWMDTFHGVRQSL

XP_028093340.1 uncharacterized protein LOC114293463 [Camellia sinensis]2.7e-3146.53Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF
        MWD   V+  EV+ GVFS+SI  + +D  + W+TG YGP +P  RQE+W+EL  L+GLC  +WC+ GDFNVV   SEK +G   S+S++ F+ +I DC  
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF

Query:  FDPPLSNGRFTWSN---SRARSRIDRALCSKGWMDTFHGVRQSL
         D PLSN RFTWSN   +R   ++DR L + G  + F  +RQ +
Subjt:  FDPPLSNGRFTWSN---SRARSRIDRALCSKGWMDTFHGVRQSL

TrEMBL top hitse value%identityAlignment
A0A1S4DXB1 uncharacterized protein LOC1079909761.4e-3049.58Show/hide
Query:  EDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVT
        EDLDH+L + A A  +WD F  +FGL +ARHR +   IEEFL + P  E+G+FLW+A +CAI+W LW E N R F G+ER   E+W +++Y+VSLW S++
Subjt:  EDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVT

Query:  RLFCNYSLGLIILDWSPFI
        + FCNY L +I+  W+ F+
Subjt:  RLFCNYSLGLIILDWSPFI

A0A200PXP4 Endonuclease/exonuclease/phosphatase5.5e-3024.38Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWV-TGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCS
        +WD  ++N  + ++G  S+SIK   +  +  WV T  Y P    GR  FW EL  +       WCI  DFN +   +E+   G   ++ K  N ++   +
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWV-TGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCS

Query:  FFDPPLSNGRFTWSNSR---ARSRIDRALCSKGWMDTFHGVRQSLDI------------SYGIHQVVCLQIERTFFPINAFR-----------RCFSLLR
          D PL+ G FTWS+ +      R+DR L S  W   +  V Q L              + GI +V         + +N  R             ++LL 
Subjt:  FFDPPLSNGRFTWSNSR---ARSRIDRALCSKGWMDTFHGVRQSLDI------------SYGIHQVVCLQIERTFFPINAFR-----------RCFSLLR

Query:  EV----------------------ELC---------------------TPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWN
        ++                      +LC                      PS +    W   H  + TLD LS + +S+     C  C+   ED++H+  +
Subjt:  EV----------------------ELC---------------------TPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWN

Query:  CAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVTRLFCNYSLG
        C +A+ +W  F  S G+ +   R L E++E +        + K +W     AI+W LW ERN R F   E    ++   VK  + LW     +F      
Subjt:  CAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVTRLFCNYSLG

Query:  LIILDW
         ++  W
Subjt:  LIILDW

A0A5E4F859 Reverse transcriptase domain-containing protein (Fragment)2.7e-2945.45Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF
        MW+  + +  +  +G FSVSI+I        W++G YGP  P+ R+ FW EL  L+GLCG+ WCI GDFNVV   SEK++GGR + S+K FN++I+D + 
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF

Query:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS
         DP L N  FTWSN R  +   R+DR L S+ W D+F  V+ +
Subjt:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS

A0A5E4GN72 PREDICTED: RNA-directed DNA polymerase (Fragment)1.2e-2945.45Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF
        MW+  + +  +  +G FSVSI+I        W++G YGP  P+ R+ FW EL  L+GLCG+ WCI GDFNVV   SEK++GGR + S+K+FN++I+D + 
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF

Query:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS
         DP L N  FTWSN R  +   R+DR L S+ W D+F  V+ +
Subjt:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)2.3e-2844.06Show/hide
Query:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF
        MW+  +++  +  +G FSVSI+I        W++G YG   P+ R+ FW EL  L+GLCG+ WCI GDFNVV   SEK++GGR + S+K+FN++I+D + 
Subjt:  MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSF

Query:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS
         DP L N  FTWSN R  +   R+DR L  + W D+F  V+ +
Subjt:  FDPPLSNGRFTWSNSRARS---RIDRALCSKGWMDTFHGVRQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.2e-0528.21Show/hide
Query:  FFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAII
        F  W V   R++T DRL    LS+  P  C+ C   +E   H+ + C F   VW  F G   L F   + +   I  +L +P   +    + +    A +
Subjt:  FFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAII

Query:  WGLWGERNNRTFRGLER
        + +W ERN     G+ R
Subjt:  WGLWGERNNRTFRGLER

AT2G02650.1 Ribonuclease H-like superfamily protein2.7e-0526.09Show/hide
Query:  IKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQG---KFL--WQ
        IK F+W+ + G + T  RL  + +    P C  CC + EE + H+++NC + ++VW       G Q+       + +   +     +      +FL  W 
Subjt:  IKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQG---KFL--WQ

Query:  AGICAIIWGLWGERN
             I+W LW  RN
Subjt:  AGICAIIWGLWGERN

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0424.79Show/hide
Query:  LFGPFCCICCQMAEEDLDHMLWNCAFARTVWD----EFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFL-WQAGICAIIWGLWGERNNRTFRGLERD
        LF    C+ C  + E ++H+L+ C FAR VW       +       + +  L   +   +  P   + G  + W      ++W LW  RN   F+G E D
Subjt:  LFGPFCCICCQMAEEDLDHMLWNCAFARTVWD----EFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFL-WQAGICAIIWGLWGERNNRTFRGLERD

Query:  PTEVWSLVKYNVSLWAS
          EV      +   W++
Subjt:  PTEVWSLVKYNVSLWAS

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-0626.83Show/hide
Query:  FFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQG-KFLWQAGICAI
        F  W V   R++T DRL    LS+  P  C+ C   ++   H+ + C F+  VW  F  S  L       L + +   L   P RE+    + +    + 
Subjt:  FFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQG-KFLWQAGICAI

Query:  IWGLWGERNNRTFRGLERDPTEV
        ++ +W ERN R   G+ R    +
Subjt:  IWGLWGERNNRTFRGLERDPTEV

AT4G29090.1 Ribonuclease H-like superfamily protein4.2e-0624Show/hide
Query:  TPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVW----------DEFFGSFGLQFARHRGLGETIEEFLPHPPF
        T   I+ F+W+ +   +     L+ + LS      CI C   +E ++H+L+ C FAR  W           E+  S  +       LG        +P +
Subjt:  TPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMAEEDLDHMLWNCAFARTVW----------DEFFGSFGLQFARHRGLGETIEEFLPHPPF

Query:  REQGKFL-WQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLW
         +  + + W      ++W LW  RN   FRG E +  EV    + ++  W
Subjt:  REQGKFL-WQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATGGTAATTCTGTTAACTGTTTGGAGGTGATGCTTGGTGTCTTCTCTGTTTCTATCAAGATTAAATGGAAGGATAAGGACTTAGGTTGGGTCACAGGTACGTA
TGGCCCGCCCAGGCCCAAAGGTAGGCAGGAGTTTTGGAATGAGCTTAGGGCCTTGTATGGGTTATGTGGGCATCATTGGTGCATTTTGGGTGACTTTAATGTTGTTTGTT
CCCCTTCAGAAAAGGCTTCGGGAGGGAGAGCTTCGAAGTCGATAAAGTCTTTTAATGAGTGGATTGAGGACTGCAGCTTTTTTGACCCCCCTCTTTCTAATGGGAGATTC
ACCTGGTCTAATAGTAGGGCACGCAGTAGGATCGATAGAGCTCTCTGCTCTAAGGGTTGGATGGATACCTTCCATGGTGTCAGACAATCCTTAGATATCAGTTATGGCAT
TCATCAGGTAGTATGTCTTCAGATTGAGAGGACCTTTTTTCCAATTAATGCATTCCGAAGGTGTTTCTCTCTACTGAGGGAGGTTGAACTTTGTACTCCTTCCGCAATAA
AGTTTTTTATTTGGCAAGTGATCCATGGAAGAGTTAATACTCTTGATCGGCTGTCCAGAAAGATTCTTAGTTTGTTTGGGCCTTTTTGTTGCATTTGTTGCCAGATGGCC
GAGGAAGACCTCGATCATATGTTATGGAATTGCGCTTTTGCTAGGACAGTGTGGGATGAGTTCTTTGGCTCGTTCGGGTTGCAGTTTGCCAGACACAGAGGCCTCGGAGA
GACGATCGAGGAGTTCCTTCCCCATCCTCCCTTTAGGGAGCAAGGAAAGTTTTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTGAGAGAAACAATA
GAACTTTTAGAGGGTTAGAGAGGGATCCTACTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCTCTTTGGGCGTCGGTGACGCGTTTATTTTGTAATTATTCCTTAGGT
CTCATCATTTTGGATTGGAGTCCCTTCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATGGTAATTCTGTTAACTGTTTGGAGGTGATGCTTGGTGTCTTCTCTGTTTCTATCAAGATTAAATGGAAGGATAAGGACTTAGGTTGGGTCACAGGTACGTA
TGGCCCGCCCAGGCCCAAAGGTAGGCAGGAGTTTTGGAATGAGCTTAGGGCCTTGTATGGGTTATGTGGGCATCATTGGTGCATTTTGGGTGACTTTAATGTTGTTTGTT
CCCCTTCAGAAAAGGCTTCGGGAGGGAGAGCTTCGAAGTCGATAAAGTCTTTTAATGAGTGGATTGAGGACTGCAGCTTTTTTGACCCCCCTCTTTCTAATGGGAGATTC
ACCTGGTCTAATAGTAGGGCACGCAGTAGGATCGATAGAGCTCTCTGCTCTAAGGGTTGGATGGATACCTTCCATGGTGTCAGACAATCCTTAGATATCAGTTATGGCAT
TCATCAGGTAGTATGTCTTCAGATTGAGAGGACCTTTTTTCCAATTAATGCATTCCGAAGGTGTTTCTCTCTACTGAGGGAGGTTGAACTTTGTACTCCTTCCGCAATAA
AGTTTTTTATTTGGCAAGTGATCCATGGAAGAGTTAATACTCTTGATCGGCTGTCCAGAAAGATTCTTAGTTTGTTTGGGCCTTTTTGTTGCATTTGTTGCCAGATGGCC
GAGGAAGACCTCGATCATATGTTATGGAATTGCGCTTTTGCTAGGACAGTGTGGGATGAGTTCTTTGGCTCGTTCGGGTTGCAGTTTGCCAGACACAGAGGCCTCGGAGA
GACGATCGAGGAGTTCCTTCCCCATCCTCCCTTTAGGGAGCAAGGAAAGTTTTTGTGGCAAGCTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGTGAGAGAAACAATA
GAACTTTTAGAGGGTTAGAGAGGGATCCTACTGAGGTTTGGTCCCTTGTTAAATATAATGTTTCTCTTTGGGCGTCGGTGACGCGTTTATTTTGTAATTATTCCTTAGGT
CTCATCATTTTGGATTGGAGTCCCTTCATTTAA
Protein sequenceShow/hide protein sequence
MWDGNSVNCLEVMLGVFSVSIKIKWKDKDLGWVTGTYGPPRPKGRQEFWNELRALYGLCGHHWCILGDFNVVCSPSEKASGGRASKSIKSFNEWIEDCSFFDPPLSNGRF
TWSNSRARSRIDRALCSKGWMDTFHGVRQSLDISYGIHQVVCLQIERTFFPINAFRRCFSLLREVELCTPSAIKFFIWQVIHGRVNTLDRLSRKILSLFGPFCCICCQMA
EEDLDHMLWNCAFARTVWDEFFGSFGLQFARHRGLGETIEEFLPHPPFREQGKFLWQAGICAIIWGLWGERNNRTFRGLERDPTEVWSLVKYNVSLWASVTRLFCNYSLG
LIILDWSPFI