; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg033881 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033881
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA topoisomerase (ATP-hydrolyzing)
Genome locationscaffold13:34956236..34962554
RNA-Seq ExpressionSpg033881
SyntenySpg033881
Gene Ontology termsGO:0006265 - DNA topological change (biological process)
GO:0005694 - chromosome (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0009330 - DNA topoisomerase complex (ATP-hydrolyzing) (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003918 - DNA topoisomerase type II (ATP-hydrolyzing) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR006691 - DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat
IPR035516 - DNA gyrase/topoisomerase IV, subunit A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598657.1 DNA gyrase subunit A, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5393.55Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S +KG NGPWLLFVSESGFGKRVPLSSFRLS L RVGLIGYKFSLEDRLAAVFVVGF+LAEDGESDEQVVLVSQSGTVNRIKVRD+SIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LD+AGKIQSASLISATDTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

XP_022131517.1 DNA gyrase subunit A, chloroplastic/mitochondrial isoform X1 [Momordica charantia]6.9e-5595.97Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S SKG+NGPWLLFVSESGFGKRVPLSSFRLS LNRVGLIGYKFS EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LDHAGKIQSASLISA DTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

XP_022131518.1 DNA gyrase subunit A, chloroplastic/mitochondrial isoform X2 [Momordica charantia]6.9e-5595.97Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S SKG+NGPWLLFVSESGFGKRVPLSSFRLS LNRVGLIGYKFS EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LDHAGKIQSASLISA DTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

XP_022961731.1 DNA gyrase subunit A, chloroplastic/mitochondrial [Cucurbita moschata]1.7e-5393.55Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S +KG NGPWLLFVSESGFGKRVPLSSFRLS L RVGLIGYKFSLEDRLAAVFVVGF+LAEDGESDEQVVLVSQSGTVNRIKVRD+SIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LD+AGKIQSASLISATDTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

XP_038885119.1 DNA gyrase subunit A, chloroplastic/mitochondrial [Benincasa hispida]3.7e-5698.36Show/hide
Query:  SKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLD
        SKG+NGPWLLFVSESGFGKRVPLSSFRLS LNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLD
Subjt:  SKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLD

Query:  HAGKIQSASLISATDTEPEEEA
        HAGKIQSASLISATDTEPEEEA
Subjt:  HAGKIQSASLISATDTEPEEEA

TrEMBL top hitse value%identityAlignment
A0A6J1BR81 DNA topoisomerase (ATP-hydrolyzing)3.3e-5595.97Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S SKG+NGPWLLFVSESGFGKRVPLSSFRLS LNRVGLIGYKFS EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LDHAGKIQSASLISA DTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

A0A6J1BTL3 DNA topoisomerase (ATP-hydrolyzing)3.3e-5595.97Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S SKG+NGPWLLFVSESGFGKRVPLSSFRLS LNRVGLIGYKFS EDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LDHAGKIQSASLISA DTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

A0A6J1HB61 DNA topoisomerase (ATP-hydrolyzing)8.2e-5493.55Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S +KG NGPWLLFVSESGFGKRVPLSSFRLS L RVGLIGYKFSLEDRLAAVFVVGF+LAEDGESDEQVVLVSQSGTVNRIKVRD+SIQSRYARGVILMR
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        LD+AGKIQSASLISATDTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

A0A6J1K6F5 DNA topoisomerase (ATP-hydrolyzing)1.2e-5292.74Show/hide
Query:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR
        S SKG NGPWLLFVSESGFGKRVPLSSFRL  LNRVGLIGYKFSLEDRLAAVFVVGF+LAEDGESDEQVVLVSQSGTVNRIKVRD+SIQSRYARGVILM+
Subjt:  SFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMR

Query:  LDHAGKIQSASLISATDTEPEEEA
        L +AGKIQSASLISATDTEPEEEA
Subjt:  LDHAGKIQSASLISATDTEPEEEA

A0A7N2LPV3 DNA topoisomerase (ATP-hydrolyzing)7.0e-5389.06Show/hide
Query:  EMESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGV
        E  +S +K  NGPWLLFVSESGFGKRVPLSSFR S LNRVGLIGYKFS EDRLAAVFVVGFSL++DGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGV
Subjt:  EMESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGV

Query:  ILMRLDHAGKIQSASLISATDTEPEEEA
        ILMRLDHAGKIQSASLISAT+ EPEEEA
Subjt:  ILMRLDHAGKIQSASLISATDTEPEEEA

SwissProt top hitse value%identityAlignment
Q1RID9 DNA gyrase subunit A2.3e-0830.59Show/hide
Query:  KAEEEDQDHILQTCDYLRVVWDLFYD-AFGEYWSEE-------MESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFV
        KA  E++D       YL V W+   + A GE ++ E        ES      +  ++L V+E+GFGKR     +R++     G+I     + D+     V
Subjt:  KAEEEDQDHILQTCDYLRVVWDLFYD-AFGEYWSEE-------MESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFV

Query:  VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLDHAGKIQSASLISATDTEPEEEA
        VG       + D++++L++ SG + R K+  V I  R   GV L RLD   K+ SASLI+ +  + EE++
Subjt:  VGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLDHAGKIQSASLISATDTEPEEEA

Q55738 DNA gyrase subunit A3.7e-1138.05Show/hide
Query:  GPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKF-SLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLDHAGK
        GPWLL V+  GFGKRVP+  FRL     +G+   +F S +D+L A+ VV         +D+++++V+  G + R  V D+S QSR A GV + RLD    
Subjt:  GPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKF-SLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLDHAGK

Query:  IQSASLISATDTE
        I + +L+  +  E
Subjt:  IQSASLISATDTE

Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial2.6e-4980.31Show/hide
Query:  EMESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGV
        E++    +   GPWLLFVSESG+GKRVP+S FR S LNRVGL GYKFS ED LAAVFVVGFSL EDGESDEQVVLVSQSGTVNRIKVRD+SIQSRYARGV
Subjt:  EMESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGV

Query:  ILMRLDHAGKIQSASLISATDTEPEEE
        ILMRL+HAGKIQSASLISA D +PE+E
Subjt:  ILMRLDHAGKIQSASLISATDTEPEEE

Q7XZF7 Probable DNA gyrase subunit A, chloroplastic/mitochondrial6.5e-4066.41Show/hide
Query:  SEEMESSFS--KGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRY
        S  M  ++S  +  + PWLLF++++G GKRVPL++FR  + NRVGL GYK   +  LAAVFVVGFSL +DGESDEQVVLVSQSGTVNRIKV+D+SI+SR 
Subjt:  SEEMESSFS--KGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRY

Query:  ARGVILMRLDHAGKIQSASLISATDTEPEEE
        ARGVILMRL+HAGKIQSASLISA + E E++
Subjt:  ARGVILMRLDHAGKIQSASLISATDTEPEEE

Q9CAF6 DNA gyrase subunit A, chloroplastic/mitochondrial1.9e-4781.45Show/hide
Query:  ESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVIL
        ++S  K   GPWLLFV E+G+GKRVPLSSFR S LNRVGL GYKF+ +DRLAAVFVVG+SLAEDGESDEQVVLVSQSGTVNRIKVRD+SIQSR ARGVIL
Subjt:  ESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVIL

Query:  MRLDHAGKIQSASLISATDTEPEE
        MRLDHAGKIQSASLISA D E  E
Subjt:  MRLDHAGKIQSASLISATDTEPEE

Arabidopsis top hitse value%identityAlignment
AT3G10690.1 DNA GYRASE A1.3e-4881.45Show/hide
Query:  ESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVIL
        ++S  K   GPWLLFV E+G+GKRVPLSSFR S LNRVGL GYKF+ +DRLAAVFVVG+SLAEDGESDEQVVLVSQSGTVNRIKVRD+SIQSR ARGVIL
Subjt:  ESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVIL

Query:  MRLDHAGKIQSASLISATDTEPEE
        MRLDHAGKIQSASLISA D E  E
Subjt:  MRLDHAGKIQSASLISATDTEPEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCGTTGGTGGGCCCGTTTTGCTGCATTCTCTGTCGGAAGGCAGAGGAGGAAGACCAGGATCACATTCTTCAGACTTGTGACTATCTGCGTGTGGTGTGGGATTT
GTTCTATGATGCTTTTGGGGAGTATTGGAGTGAAGAAATGGAGAGTAGTTTCTCTAAGGGCTATAATGGCCCATGGCTCTTATTTGTATCTGAAAGTGGGTTCGGAAAGC
GGGTTCCATTGAGCAGTTTCCGCTTGTCCTCTTTGAATAGAGTTGGTTTGATTGGATACAAGTTTTCCTTGGAGGACCGTTTGGCAGCTGTTTTTGTAGTTGGATTCTCA
TTGGCAGAGGATGGTGAAAGTGATGAACAAGTAGTTCTAGTAAGCCAAAGTGGTACAGTCAATAGAATTAAGGTTCGGGATGTTTCTATACAATCTCGCTATGCCAGGGG
AGTTATTTTAATGAGGTTGGATCATGCTGGAAAGATCCAGTCTGCTTCTTTAATCTCAGCTACGGATACAGAGCCCGAGGAAGAGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTCGTTGGTGGGCCCGTTTTGCTGCATTCTCTGTCGGAAGGCAGAGGAGGAAGACCAGGATCACATTCTTCAGACTTGTGACTATCTGCGTGTGGTGTGGGATTT
GTTCTATGATGCTTTTGGGGAGTATTGGAGTGAAGAAATGGAGAGTAGTTTCTCTAAGGGCTATAATGGCCCATGGCTCTTATTTGTATCTGAAAGTGGGTTCGGAAAGC
GGGTTCCATTGAGCAGTTTCCGCTTGTCCTCTTTGAATAGAGTTGGTTTGATTGGATACAAGTTTTCCTTGGAGGACCGTTTGGCAGCTGTTTTTGTAGTTGGATTCTCA
TTGGCAGAGGATGGTGAAAGTGATGAACAAGTAGTTCTAGTAAGCCAAAGTGGTACAGTCAATAGAATTAAGGTTCGGGATGTTTCTATACAATCTCGCTATGCCAGGGG
AGTTATTTTAATGAGGTTGGATCATGCTGGAAAGATCCAGTCTGCTTCTTTAATCTCAGCTACGGATACAGAGCCCGAGGAAGAGGCTTAA
Protein sequenceShow/hide protein sequence
MPSLVGPFCCILCRKAEEEDQDHILQTCDYLRVVWDLFYDAFGEYWSEEMESSFSKGYNGPWLLFVSESGFGKRVPLSSFRLSSLNRVGLIGYKFSLEDRLAAVFVVGFS
LAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLDHAGKIQSASLISATDTEPEEEA