| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG7029701.1 RNA polymerase sigma factor sigC [Cucurbita argyrosperma subsp. argyrosperma] | 7.1e-271 | 87.01 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLE--EIEINSRTKSLNHLH
MGTSFRPNLKWAFQ QTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LDLE EIEINS KSL HL
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLE--EIEINSRTKSLNHLH
Query: YGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQ
YG KN+G SKV+DNF SCTSLPTG+ASPFGMLMENLDVLE TFTESGMLSLERDI+LQLTKLGALEFFN CLSRTLK +SSFHDLSDLP+E GGDHN+NQ
Subjt: YGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQ
Query: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
KTDD ++I+VYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ RK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR A
Subjt: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADAA +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEG
IQIPWSLTKAINQIQKARK LNN GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LMKKDI NLLE
Subjt: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEG
Query: LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
LESRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+EETVRNLSHYLD
Subjt: LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 7.1e-279 | 88.55 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGT FRPNLKW FQ QTHS K+SPSKLSPYASKGREA+FNS RLSFFS+ICEEGESI RETLKTYTCLSEAPQTS DD L+LEEIE+NS KSL+ LHYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTD
IK+T SKV+DNFSS TS+PTGKASPFG+LMENLDVLE TF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDG DHN+NQKT+
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTD
Query: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
D D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KE +S IFSRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMS
Subjt: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
Query: CWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
CWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Subjt: CWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Query: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLES
PWSLTKAINQIQKARK LN GGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDI N+L+GLES
Subjt: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLES
Query: RERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
RERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+EETV+NLSHYLD
Subjt: RERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| XP_022131819.1 RNA polymerase sigma factor sigC isoform X1 [Momordica charantia] | 4.7e-275 | 88.24 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGTSFRPNLKWAFQ QTHSR SPSK P+ASKGREASFNSARLSFFSAICEEGES SRETLKTYTCLSEAPQTSADD LDL+EIEINSR + L+H HYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPLEDGGDHNLNQK
IKNTG SK++DNFSSCTSLPTGKAS FGMLMENLDVLE FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK TSSF DLSDLP+EDGG HN+NQK
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPLEDGGDHNLNQK
Query: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
TD +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKE F NSA F RKR NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + AS
Subjt: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
Query: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAG+DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGL
QIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KLMKKDI NLLEGL
Subjt: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGL
Query: ESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
E RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+EET NL HYLD
Subjt: ESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 1.1e-271 | 87.14 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGTSFRPNLKWAFQ QTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LDLEE EINS KSL+HLHYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQKT
KN+G SKV+DNF SCTSLPTG+ASPF MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E GGDHN+NQKT
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQKT
Query: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
DD +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR ASM
Subjt: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
Query: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLE
IPWSLTKAINQIQKARK LNN GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LMKKDI NLLE LE
Subjt: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLE
Query: SRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
SRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+EETVRNLSHYLD
Subjt: SRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 4.1e-279 | 88.63 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGTSFRPNLKW FQ QTHSRK+SPSKL PYASKGREA+FNS RLSFFS+I EEGESISRETLKTYTCLSEAPQTSADD L+LEEIE+N KSL+ LHYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPL----EDGGDHNLN
IKNT SKV+DNFSSCTS P+GKASPFGMLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+ ED GDHN+N
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPL----EDGGDHNLN
Query: QKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRI
QKT D +DIIVYSGKRA RRSVKKRA+D+ADKV SQP+ATRAAKE +SAI SRK+ASNSRKRRLI+ARNEAEMSTGVKVVANLERI+ETLEKESGR+
Subjt: QKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRI
Query: ASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
SMSCWA+AAGVDIKDL+KQLQFGWFCQDELLRSTNSL++FLA+KYRCSGLPMEDLVQAG+LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN+R
Subjt: ASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
Query: GIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLE
GIQIPWSLTKAINQIQKARK LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTAD SIQSPEETVK+KLMKKDI N+LE
Subjt: GIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLE
Query: GLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
GLESRERQVL LRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL+ EETVRN SHYLD
Subjt: GLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BBM8 RNA polymerase sigma factor sigC | 3.4e-279 | 88.55 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGT FRPNLKW FQ QTHS K+SPSKLSPYASKGREA+FNS RLSFFS+ICEEGESI RETLKTYTCLSEAPQTS DD L+LEEIE+NS KSL+ LHYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTD
IK+T SKV+DNFSS TS+PTGKASPFG+LMENLDVLE TF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLP+EDG DHN+NQKT+
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTD
Query: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
D D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KE +S IFSRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMS
Subjt: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
Query: CWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
CWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Subjt: CWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Query: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLES
PWSLTKAINQIQKARK LN GGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDI N+L+GLES
Subjt: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLES
Query: RERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
RERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+EETV+NLSHYLD
Subjt: RERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 2.3e-275 | 88.24 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGTSFRPNLKWAFQ QTHSR SPSK P+ASKGREASFNSARLSFFSAICEEGES SRETLKTYTCLSEAPQTSADD LDL+EIEINSR + L+H HYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPLEDGGDHNLNQK
IKNTG SK++DNFSSCTSLPTGKAS FGMLMENLDVLE FTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK TSSF DLSDLP+EDGG HN+NQK
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK--TSSFHDLSDLPLEDGGDHNLNQK
Query: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
TD +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKE F NSA F RKR NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + AS
Subjt: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
Query: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAAG+DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGL
QIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVK+KLMKKDI NLLEGL
Subjt: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGL
Query: ESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
E RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK+EET NL HYLD
Subjt: ESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| A0A6J1HEX7 RNA polymerase sigma factor sigC-like | 1.0e-270 | 87.19 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLE--EIEINSRTKSLNHLH
MGTSFRPNLKWAFQ QTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LDLE EIEINS KSL HL
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLE--EIEINSRTKSLNHLH
Query: YGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQ
YG KN+G SKV+DNF SCTSLPTG+ASPFGMLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E GGDHN+NQ
Subjt: YGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQ
Query: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
KTDD ++IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ET EKESGR A
Subjt: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADAA +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEG
IQIPWSLTKAINQIQKARK LNN GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LMKKDI NLLE
Subjt: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEG
Query: LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
LESRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+EETVRNLSHYLD
Subjt: LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 5.3e-272 | 87.14 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
MGTSFRPNLKWAFQ QTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LDLEE EINS KSL+HLHYG
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLEEIEINSRTKSLNHLHYG
Query: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQKT
KN+G SKV+DNF SCTSLPTG+ASPF MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E GGDHN+NQKT
Subjt: IKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQKT
Query: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
DD +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR ASM
Subjt: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
Query: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLE
IPWSLTKAINQIQKARK LNN GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LMKKDI NLLE LE
Subjt: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLE
Query: SRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
SRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+EETVRNLSHYLD
Subjt: SRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 3.4e-271 | 86.83 | Show/hide |
Query: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLE--EIEINSRTKSLNHLH
MGTSFRPNLKWAFQ QTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LDLE E+EINS KSL+HLH
Subjt: MGTSFRPNLKWAFQFQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDFLDLE--EIEINSRTKSLNHLH
Query: YGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQ
YG KN+G SKV+DNF SCTSLPTG+ASPF MLMENLDVLE TFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF DLSDLP+E GGDHN+NQ
Subjt: YGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEGTFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDLSDLPLEDGGDHNLNQ
Query: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
KTDD +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKE FR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR A
Subjt: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
Query: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEG
IQIPWSLTKAINQIQKARK LNN GRRYSDDD+AKATGLPLAKVRVASNCLKVVGSVDQK+GDGLNMKYME TADTSI+SPE+TVKR+LMKKDI NLLE
Subjt: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEG
Query: LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
LESRERQVL LRYGL+D QPKSLEEIGKLL VSKEWVRKIE+KA TKLK+EETVRNLSHYLD
Subjt: LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O22056 RNA polymerase sigma factor sigB | 5.1e-54 | 32.23 | Show/hide |
Query: TLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATR-AAKEIFRNSAIFSRKRASNSRKRRLIV
T S+ + DL E + L + + + V S ++ R++ + + L+ + K S P R A+E+ N + + ++S K L+
Subjt: TLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATR-AAKEIFRNSAIFSRKRASNSRKRRLIV
Query: ARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVE
R E E+S G++ + LER++ L + SGR + + WA AAGVD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G E
Subjt: ARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVE
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + G+ +++IA+ATGL + ++ K S+DQK+G N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
Query: KYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
K E AD + E+ + ++ M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLK+++ +L YL
Subjt: KYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
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| O24621 RNA polymerase sigma factor sigC | 5.2e-115 | 44.85 | Show/hide |
Query: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADD-FLDLEEIEINSRTKSLNHLHYGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEG
+ R SF S++ EE ++LK C S +P T+ ++ +++L++ + +N G + ++SS + L + +L +NL LE
Subjt: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADD-FLDLEEIEINSRTKSLNHLHYGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEG
Query: TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRAL--DNADKVASQPIAT
TF + +ERDI+LQ+ KLGA E F TCLSR +S LSD + D + S +R ++ ++ ++ +N D+ +S PI
Subjt: TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRAL--DNADKVASQPIAT
Query: RAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVF
R + N + +R RK+R ++RNE EMSTGVK+VA++ERI+ LE+ESG++AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLV+F
Subjt: RAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVF
Query: LAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATG
LA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARKTL ++G + +D++IAK TG
Subjt: LAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATG
Query: LPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVR
+ K+R A+ CLKVVGS+D+K+GD K++EFT DT+++SPEE V R+ ++DI +LLEGLE RE+QV+ LRYGL D++PKSLEEIGKLL VSKEW+R
Subjt: LPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVR
Query: KIEKKAMTKLKDEETVRNLSHYLD
KIE++AM KL+D+ +L +YL+
Subjt: KIEKKAMTKLKDEETVRNLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 8.1e-44 | 32.33 | Show/hide |
Query: KVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELL
K A T++ K+ + +I R + RL+ A E E++ + + LER++E L ++ R S WA+A + + + +L G +D+++
Subjt: KVASQPIATRAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELL
Query: RSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNG-GRRYSD
+S LVV +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+ GR+ ++
Subjt: RSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNG-GRRYSD
Query: DDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLL
++IA + + K+R + ++ S++ +G + + +F ++ ++PE+ V + L+++D+ +L+ L RER VL LRYGL D + K+LEEIG++
Subjt: DDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLL
Query: HVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
+V++E +R+IE KA+ KL+ L Y+
Subjt: HVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 1.1e-43 | 32.74 | Show/hide |
Query: ALDNADKVASQPIATRAAKEIFRNSAIFS--RKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFG
A+D+ D V A AK R + R + RL+ A E E++ + + LERI++ L ++ R+ S + WA A + + +++L G
Subjt: ALDNADKVASQPIATRAAKEIFRNSAIFS--RKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFG
Query: WFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNN
+D++++S LVV +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+
Subjt: WFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNN
Query: G-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKS
GR+ ++++IA + + K+R + ++ S++ +G + + +F + ++PE+ V + L+++D+ +L L RER VL LRYGL D + K+
Subjt: G-GRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKS
Query: LEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
LEEIG+L +V++E +R+IE KA+ KL+ L Y+
Subjt: LEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.8e-43 | 31.67 | Show/hide |
Query: RRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV
++L+ A+ EAE+ + ++ + LE++K LE ++G ++ WA+A G+ L+ + G +++L+ + LVV +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV
Query: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMG
++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +ARKT + G R S +++A G+ K+ + S+ Q +
Subjt: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMG
Query: DGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
+ + E T D+ I++P +V ++LM+ + NLL L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: DGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G08540.1 RNApolymerase sigma subunit 2 | 3.6e-55 | 32.23 | Show/hide |
Query: TLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATR-AAKEIFRNSAIFSRKRASNSRKRRLIV
T S+ + DL E + L + + + V S ++ R++ + + L+ + K S P R A+E+ N + + ++S K L+
Subjt: TLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATR-AAKEIFRNSAIFSRKRASNSRKRRLIV
Query: ARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVE
R E E+S G++ + LER++ L + SGR + + WA AAGVD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G+++G E
Subjt: ARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVE
Query: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + G+ +++IA+ATGL + ++ K S+DQK+G N+
Subjt: RFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNM
Query: KYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
K E AD + E+ + ++ M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLK+++ +L YL
Subjt: KYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYL
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| AT1G64860.1 sigma factor A | 7.6e-29 | 30.41 | Show/hide |
Query: VARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGV
V R ++ +G+++ + R+K+ L G S A + + +LQ L +++L S LV+ +A++Y G M DLVQ G +G+L+G+
Subjt: VARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGV
Query: ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLN-
E+FD +GFR STY+ +WIR+ +SR + NSR +++P L + + I+ A+ L G S D IA++ + KVR A+ + V S+D+ LN
Subjt: ERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLN-
Query: ---MKYMEFTADTSIQ-SPEETVKRKLMKKDILNLLEG-LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNL
+ + ADT ++ +P +K+++ L+ L RE++++ L YGL D + + E+I K + +S+E VR++ A+ KLK R +
Subjt: ---MKYMEFTADTSIQ-SPEETVKRKLMKKDILNLLEG-LESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNL
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.3e-44 | 31.67 | Show/hide |
Query: RRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV
++L+ A+ EAE+ + ++ + LE++K LE ++G ++ WA+A G+ L+ + G +++L+ + LVV +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV
Query: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMG
++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P ++ + ++ +ARKT + G R S +++A G+ K+ + S+ Q +
Subjt: LQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMG
Query: DGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
+ + E T D+ I++P +V ++LM+ + NLL L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: DGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 3.7e-116 | 44.85 | Show/hide |
Query: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADD-FLDLEEIEINSRTKSLNHLHYGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEG
+ R SF S++ EE ++LK C S +P T+ ++ +++L++ + +N G + ++SS + L + +L +NL LE
Subjt: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADD-FLDLEEIEINSRTKSLNHLHYGIKNTGRSKVDDNFSSCTSLPTGKASPFGMLMENLDVLEG
Query: TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRAL--DNADKVASQPIAT
TF + +ERDI+LQ+ KLGA E F TCLSR +S LSD + D + S +R ++ ++ ++ +N D+ +S PI
Subjt: TFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDLSDLPLEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRAL--DNADKVASQPIAT
Query: RAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVF
R + N + +R RK+R ++RNE EMSTGVK+VA++ERI+ LE+ESG++AS+SCWA AAG++ K L + L +GW+C+DEL++ST SLV+F
Subjt: RAAKEIFRNSAIFSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAAGVDIKDLQKQLQFGWFCQDELLRSTNSLVVF
Query: LAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATG
LA+ YR G+ EDL+QAG +GVLQG ERFD RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARKTL ++G + +D++IAK TG
Subjt: LAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATG
Query: LPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVR
+ K+R A+ CLKVVGS+D+K+GD K++EFT DT+++SPEE V R+ ++DI +LLEGLE RE+QV+ LRYGL D++PKSLEEIGKLL VSKEW+R
Subjt: LPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEEIGKLLHVSKEWVR
Query: KIEKKAMTKLKDEETVRNLSHYLD
KIE++AM KL+D+ +L +YL+
Subjt: KIEKKAMTKLKDEETVRNLSHYLD
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| AT5G13730.1 sigma factor 4 | 5.4e-35 | 36.6 | Show/hide |
Query: QDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGR
++++ R LVV +A Y+ GL ++DL+Q G++G+L+G ERFDP RG++ STY+ +WI++++ R +A SR +++P S+ + ++ +A L R
Subjt: QDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGR
Query: RY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEE
R S ++IA+ L ++ VR+A + S+D+ M E PEE VKR+ MK +I LL L +RE +VL L +GL P S EE
Subjt: RY-SDDDIAKATGLPLAKVRVASNCLKVVGSVDQKMGDGLNMKYMEFTADTSIQSPEETVKRKLMKKDILNLLEGLESRERQVLALRYGLVDFQPKSLEE
Query: IGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHY
IGK L +S+E VR+I A+ KL++ V +L Y
Subjt: IGKLLHVSKEWVRKIEKKAMTKLKDEETVRNLSHY
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