; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg033939 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033939
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine/arginine-rich splicing factor SC35-like
Genome locationscaffold13:34513188..34517084
RNA-Seq ExpressionSpg033939
SyntenySpg033939
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064834.1 serine/arginine-rich splicing factor SC35-like [Cucumis melo var. makuwa]2.1e-11689.22Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKGRVMESSSKTRGRSRSRSPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSRSRSASPDR+KDRRRGRDDDE
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADVS
        +RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E SPK DNGSPDDKPVDSRSPSPA+SDADVS
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADVS

KAG6598682.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia]3.1e-11588.81Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKG+VMESSSK RGRSRSRSPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSRSRSASPDR KDRRRGRDD E
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV
        +RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSDDEHSP+RDNGSPDDKPVDSRSPSPAKSDADV
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV

XP_008445340.1 PREDICTED: serine/arginine-rich splicing factor SC35-like [Cucumis melo]1.8e-11589.14Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKGRVMESSSKTRGRSRSRSPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSRSRSASPDR+KDRRRGRDDDE
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD
        +RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E SPK DNGSPDDKPVDSRSPSPA+SDAD
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD

XP_011649457.1 serine/arginine-rich splicing factor SC35 isoform X2 [Cucumis sativus]2.4e-11588.76Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKGRVMESSSKTRGRSRSRSPRSR                 HRDD+RDRDYRRRSRSRSRERYDRDR H+SERER+RSRSRSASPDR+KDRRRGRDDDE
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD
        +RSAS SDRSMSP RHSPDTRRSISPR+T PSR RSDDEHSPK DNGSPDDKPVDSRSPSPA+SDAD
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD

XP_022997247.1 serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima]9.0e-11588.43Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKG+VMESSSK RGRSRSRSPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSRSRSASPDR KDRRRGRDD E
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV
        +RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSD+EHSP+RDNGSPDDKPVDSRSPSPAKSDADV
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV

TrEMBL top hitse value%identityAlignment
A0A0A0LQG4 RRM domain-containing protein1.2e-11588.76Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKGRVMESSSKTRGRSRSRSPRSR                 HRDD+RDRDYRRRSRSRSRERYDRDR H+SERER+RSRSRSASPDR+KDRRRGRDDDE
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD
        +RSAS SDRSMSP RHSPDTRRSISPR+T PSR RSDDEHSPK DNGSPDDKPVDSRSPSPA+SDAD
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD

A0A1S3BCG4 serine/arginine-rich splicing factor SC35-like8.8e-11689.14Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKGRVMESSSKTRGRSRSRSPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSRSRSASPDR+KDRRRGRDDDE
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD
        +RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E SPK DNGSPDDKPVDSRSPSPA+SDAD
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDAD

A0A5A7VC44 Serine/arginine-rich splicing factor SC35-like1.0e-11689.22Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKGRVMESSSKTRGRSRSRSPRSR                 HRDDYRDRDYRRRSRSRSRERYDRDR H+SERER+RSRSRSASPDR+KDRRRGRDDDE
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADVS
        +RSAS SDRSMSP RHSPDTRRSISPRRT PSRGRSD+E SPK DNGSPDDKPVDSRSPSPA+SDADVS
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADVS

A0A6J1HFJ8 serine/arginine-rich splicing factor SC35-like isoform X29.7e-11588.43Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKG+VMESSSK RGRSRSRSPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSRSRSASPDR KDR RGRDD E
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV
        +RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSDDEHSP+RDNGSPDDKPVDSRSPSPAKSDADV
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV

A0A6J1K4H2 serine/arginine-rich splicing factor SC35-like isoform X24.4e-11588.43Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE
        IRKG+VMESSSK RGRSRSRSPR R                 HRDDYRDRDYRRRSRSRSRER+DRDR H+SERER+RSRSRSASPDR KDRRRGRDD E
Subjt:  IRKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDE

Query:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV
        +RSAS SDRSMSPARHSPDTRRSISPRRT PSRGRSD+EHSP+RDNGSPDDKPVDSRSPSPAKSDADV
Subjt:  QRSASRSDRSMSPARHSPDTRRSISPRRT-PSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADV

SwissProt top hitse value%identityAlignment
P30352 Serine/arginine-rich splicing factor 23.1e-2541.06Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ
        R+G        +    RSRSPR R      S                    R RSRSRSR RY R +     R R RSRSRS S  R+  R + +     
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ

Query:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS
        RS SRS RS S +R  P T    S R + SR RS        + G+
Subjt:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS

Q01130 Serine/arginine-rich splicing factor 29.0e-2540.65Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ
        R+G             RSRSPR R      S                    R RSRSRSR RY R +     R R RSRSRS S  R+  R + +     
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ

Query:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS
        RS SRS RS S +R  P     +S R + SR RS        + G+
Subjt:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS

Q3MHR5 Serine/arginine-rich splicing factor 29.0e-2540.65Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ
        R+G             RSRSPR R      S                    R RSRSRSR RY R +     R R RSRSRS S  R+  R + +     
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ

Query:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS
        RS SRS RS S +R  P     +S R + SR RS        + G+
Subjt:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS

Q62093 Serine/arginine-rich splicing factor 29.0e-2540.65Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKI

Query:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ
        R+G             RSRSPR R      S                    R RSRSRSR RY R +     R R RSRSRS S  R+  R + +     
Subjt:  RKGRVMESSSKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ

Query:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS
        RS SRS RS S +R  P     +S R + SR RS        + G+
Subjt:  RSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGS

Q9FMG4 Serine/arginine-rich splicing factor SC352.1e-6664.07Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRR
        I KGRV+E   K+R RSRSRSP       RSR+     S     +     RDDYR++DYR+RSRSRS +R +R    K    R R+RSRSASPD  K R 
Subjt:  IRKGRVMESSSKTRGRSRSRSP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRR

Query:  RGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKS
        RGR D+E RS SRS  S SPAR SP   RS SP++T          SP R+  SP DK  + RSPSP +S
Subjt:  RGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKS

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 331.8e-1236.54Show/hide
Query:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR
        SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   +DG +L GRE+ V FA+     E  +K   M +  +  GR
Subjt:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRGR

Query:  ------------SRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRR---RSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ
                    SRSRSP  R     S              DY     RR   RS S   ERYD  R +        SR RS +P R K   R      +
Subjt:  ------------SRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRR---RSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQ

Query:  RSASRSD-RSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSP
        RS SRS  RS SP   SP   RS+SPRR+ SR       SP+R   S   +P  SRS SP
Subjt:  RSASRSD-RSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSP

AT3G13570.1 SC35-like splicing factor 30A3.8e-1033.2Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRK
        FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F+++    +A +A  ++DG +L GRE+ V FA+   N +K  +
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRK

Query:  GRVMESSSKT-RGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDY------RRRSRSRSRE--RYDRDRLHKSERERHRSRSRSASPDRNKDRRR
         R  +   ++ R + R RSP   +   P             R   R R Y      R +SRS S +  RY+++R +      + SR RS SP R K   R
Subjt:  GRVMESSSKT-RGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDY------RRRSRSRSRE--RYDRDRLHKSERERHRSRSRSASPDRNKDRRR

Query:  GRDDDEQRSAS-RSDRSMSPAR---HSPDTRRSISPRRTPSRGRSDDEHSPKR
              +RS S R +RS +P +    SP  R+S SP   P RG  + + SP +
Subjt:  GRDDDEQRSAS-RSDRSMSPAR---HSPDTRRSISPRRTPSRGRSDDEHSPKR

AT5G18810.1 SC35-like splicing factor 282.2e-1033.16Show/hide
Query:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRG--
        LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ +++ +++ GREI + FA+   N +  ++ R    +S   G  
Subjt:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESSSKTRG--

Query:  -RSRSRSPRSRTDLHP---SSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDR-DRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQRSASR
         R+  RSPR R   H    S    E  +     DD      RRRSRS SR    R +R +KS   R     R  +P R++   R R     RS SR
Subjt:  -RSRSRSPRSRTDLHP---SSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDR-DRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQRSASR

AT5G64200.1 ortholog of human splicing factor SC351.5e-6764.07Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRR
        I KGRV+E   K+R RSRSRSP       RSR+     S     +     RDDYR++DYR+RSRSRS +R +R    K    R R+RSRSASPD  K R 
Subjt:  IRKGRVMESSSKTRGRSRSRSP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRR

Query:  RGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKS
        RGR D+E RS SRS  S SPAR SP   RS SP++T          SP R+  SP DK  + RSPSP +S
Subjt:  RGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKS

AT5G64200.2 ortholog of human splicing factor SC351.5e-6764.07Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEK
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEK

Query:  IRKGRVMESSSKTRGRSRSRSP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRR
        I KGRV+E   K+R RSRSRSP       RSR+     S     +     RDDYR++DYR+RSRSRS +R +R    K    R R+RSRSASPD  K R 
Subjt:  IRKGRVMESSSKTRGRSRSRSP-------RSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRR

Query:  RGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKS
        RGR D+E RS SRS  S SPAR SP   RS SP++T          SP R+  SP DK  + RSPSP +S
Subjt:  RGRDDDEQRSASRSDRSMSPARHSPDTRRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGACGATCTTTACCCCCTTTTCGA
CAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGACGAAGCACAGAAGGCAA
TTGATAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTTGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAGAGTGATGGAGTCATCA
TCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGACGGACTTGCATCCTTCCTCTGTTTTGGTAGAATTGGCATATATGGTTTGGCATCGTGATGACTA
CAGAGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGGGATAGACTCCACAAAAGTGAAAGAGAACGCCATCGAAGTAGGAGTCGCAGTG
CTAGTCCTGACCGTAATAAGGATCGTAGGAGGGGAAGAGATGATGATGAACAGCGTAGTGCTAGTCGCTCTGATAGAAGCATGTCGCCTGCCCGGCATTCCCCCGATACT
CGGAGAAGCATATCTCCACGTAGGACTCCATCGAGGGGTAGAAGCGATGATGAGCATTCACCAAAGCGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGGAG
CCCTTCTCCTGCTAAATCTGATGCTGATGTGAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGACGATCTTTACCCCCTTTTCGA
CAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCGGACGAAGCACAGAAGGCAA
TTGATAAGCTTGACGGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTTGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAGAGTGATGGAGTCATCA
TCGAAGACAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTTCAAGGACGGACTTGCATCCTTCCTCTGTTTTGGTAGAATTGGCATATATGGTTTGGCATCGTGATGACTA
CAGAGATAGGGATTACAGGAGAAGAAGCCGCAGTAGAAGCCGGGAGAGATATGATCGGGATAGACTCCACAAAAGTGAAAGAGAACGCCATCGAAGTAGGAGTCGCAGTG
CTAGTCCTGACCGTAATAAGGATCGTAGGAGGGGAAGAGATGATGATGAACAGCGTAGTGCTAGTCGCTCTGATAGAAGCATGTCGCCTGCCCGGCATTCCCCCGATACT
CGGAGAAGCATATCTCCACGTAGGACTCCATCGAGGGGTAGAAGCGATGATGAGCATTCACCAAAGCGAGATAATGGCTCACCAGATGATAAACCAGTTGATTCTCGGAG
CCCTTCTCCTGCTAAATCTGATGCTGATGTGAGCTAA
Protein sequenceShow/hide protein sequence
MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGRVMESS
SKTRGRSRSRSPRSRTDLHPSSVLVELAYMVWHRDDYRDRDYRRRSRSRSRERYDRDRLHKSERERHRSRSRSASPDRNKDRRRGRDDDEQRSASRSDRSMSPARHSPDT
RRSISPRRTPSRGRSDDEHSPKRDNGSPDDKPVDSRSPSPAKSDADVS