; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg033971 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg033971
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold13:33872646..33876393
RNA-Seq ExpressionSpg033971
SyntenySpg033971
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7801271.1 reverse transcriptase [Senna tora]1.6e-0743.02Show/hide
Query:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDIL--FSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAI
        W PPP  +WKLNTD +C  + +  G G + R+  G+ +  FS  + E  +L   +AEL AIF+G+K    L CS+L+VESDSL  +
Subjt:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDIL--FSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAI

OMO81404.1 reverse transcriptase [Corchorus capsularis]1.2e-0728.99Show/hide
Query:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL
        LE Y S+  +    S+++ R           W PPP    K+NTDAA    S   G G++ R+  G+I+  ++   +   ++  AE+HA+  G K     
Subjt:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL

Query:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNL
        G  + + ESDSL+AI  + K  P++ +   +   + NL
Subjt:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNL

XP_018819751.1 uncharacterized protein LOC108990286 [Juglans regia]2.1e-0725.95Show/hide
Query:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL
        L   R++  KNS+        +  L N    W+PPP + WK+N DAA D +    G G+I RN  G ++ +S L   ++ +  L E     +  +    L
Subjt:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL

Query:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCT
        G +N+++E D+L  I  +  +S  W     ++  +     +FE+   +  +   N+ T
Subjt:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCT

XP_018857521.1 uncharacterized protein LOC109019635 [Juglans regia]1.2e-0736.94Show/hide
Query:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEAL
        W PPP    KLN D A     S +G G+I R+  G ++FS++  E   ++    EL A+ +G++  L LG  +L VESD+L+ +  LTK+       E L
Subjt:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEAL

Query:  VMFIWNLSHSF
        V  I NL   F
Subjt:  VMFIWNLSHSF

XP_021748567.1 uncharacterized protein LOC110714367 [Chenopodium quinoa]2.5e-0836.94Show/hide
Query:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEAL
        WTPPP N  KLN DA+ D  +   G+G I R+  G +LFS+        +  +AE  A   G+KK    G  N+++ESDSL  +  L K + ++ DV+ +
Subjt:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEAL

Query:  VMFIWNLSHSF
        +  I +LS  F
Subjt:  VMFIWNLSHSF

TrEMBL top hitse value%identityAlignment
A0A1R3IFQ3 Reverse transcriptase6.0e-0828.99Show/hide
Query:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL
        LE Y S+  +    S+++ R           W PPP    K+NTDAA    S   G G++ R+  G+I+  ++   +   ++  AE+HA+  G K     
Subjt:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL

Query:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNL
        G  + + ESDSL+AI  + K  P++ +   +   + NL
Subjt:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNL

A0A2I4EK26 uncharacterized protein LOC1089902861.0e-0725.95Show/hide
Query:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL
        L   R++  KNS+        +  L N    W+PPP + WK+N DAA D +    G G+I RN  G ++ +S L   ++ +  L E     +  +    L
Subjt:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL

Query:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCT
        G +N+++E D+L  I  +  +S  W     ++  +     +FE+   +  +   N+ T
Subjt:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCT

A0A2I4HMY3 uncharacterized protein LOC1090196356.0e-0836.94Show/hide
Query:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEAL
        W PPP    KLN D A     S +G G+I R+  G ++FS++  E   ++    EL A+ +G++  L LG  +L VESD+L+ +  LTK+       E L
Subjt:  WTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEAL

Query:  VMFIWNLSHSF
        V  I NL   F
Subjt:  VMFIWNLSHSF

A0A2P6PKD3 Putative RNA-directed DNA polymerase1.3e-0730.82Show/hide
Query:  NLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHL-AELHAIFKGMKKTLSLGCSNLMVESDSLVAII
        ++RS+ S  +  A W PPP   +K+NTDAA +  S + G G + R+ +G +L    L +  H  + L AE  AI  G+    SL  S+  +ESDSLV I 
Subjt:  NLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHL-AELHAIFKGMKKTLSLGCSNLMVESDSLVAII

Query:  FLTK--KSPIWKDVEAL------------VMFIWNLSHSFEAKEDVTCKTSKNRCTPVW
         L     S  W   + +            V ++W   H+  A + +    S+  CT  W
Subjt:  FLTK--KSPIWKDVEAL------------VMFIWNLSHSFEAKEDVTCKTSKNRCTPVW

A0A6P9EAW2 uncharacterized protein LOC1183445711.3e-0726.28Show/hide
Query:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL
        L   R++  KNS+        +  L N    W+PPP + WK+N DAA D +    G G+I RN  G ++ +S L   ++ +  LAE     +  +    L
Subjt:  LESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHAIFKGMKKTLSL

Query:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNR
        G +N+++E D+L  I  +  +S  W     ++  +     +FE+   +  +   N+
Subjt:  GCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTCACAATGAACCCATTCCTCCATTAATCCAAAGAAGTCAGTGGATAGCAAGATACCTGGAATCTTACCGAAGTGTGAATGAGAAGAACTCGTCGACTTCGAT
TTCCAATCTTAGATCGAATCCCTCCCTCTTCAATACTGTTGCATGTTGGACTCCCCCTCCGGCGAATTTCTGGAAATTAAATACCGATGCTGCATGTGATCCATCTTCTT
CTGCTACTGGCTATGGTTTGATTTGCAGAAATGGAGAAGGAGATATTTTGTTTTCTTCGGCTCTGTTTGAGGATATTCATCTGGAAGCCCATCTTGCCGAGCTTCACGCA
ATTTTCAAAGGGATGAAGAAAACCCTTAGCCTTGGATGTTCTAATCTGATGGTGGAATCAGACAGCTTAGTGGCAATTATTTTCCTCACAAAGAAATCCCCAATTTGGAA
GGACGTGGAGGCCTTGGTGATGTTCATCTGGAATTTAAGCCACTCTTTCGAAGCTAAGGAAGACGTGACCTGCAAAACCAGCAAAAACCGCTGCACACCGGTGTGGTGTA
GGCCACACCGCCTCCGATGCCTAAGTCAGAAAACAGAGGAGGCGTTGGAAAGGTTTTTAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCATCAGGGG
CCGAAAGGAGGTGACCGAGCCCGACCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTTTGTCGAGGCTGACCATATGGGTCGGGCCATGTTGGCCTTACCCTTTGGT
CCGGTCTTCCTCTGGGTCGATTCTCTGGTCCTACCTTTGTCCGATTGTCCTCGTCAGCTCCTTGTTCGTCAGTGTGGCTGAGCTCCTTAAGCCCGATTTAAGAGTACGAC
TCTTGTCTCGCGCTTCGGCTGTGCTAAAAAGTGAAGTGACTGAGAACTCGAACCAGTCATGCTGCTCTGAATGCGTGCCTGAGGGTTGGCTTCGGAGCTGGGATGCTCGA
CCTTGGCCTTGGCATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTCACAATGAACCCATTCCTCCATTAATCCAAAGAAGTCAGTGGATAGCAAGATACCTGGAATCTTACCGAAGTGTGAATGAGAAGAACTCGTCGACTTCGAT
TTCCAATCTTAGATCGAATCCCTCCCTCTTCAATACTGTTGCATGTTGGACTCCCCCTCCGGCGAATTTCTGGAAATTAAATACCGATGCTGCATGTGATCCATCTTCTT
CTGCTACTGGCTATGGTTTGATTTGCAGAAATGGAGAAGGAGATATTTTGTTTTCTTCGGCTCTGTTTGAGGATATTCATCTGGAAGCCCATCTTGCCGAGCTTCACGCA
ATTTTCAAAGGGATGAAGAAAACCCTTAGCCTTGGATGTTCTAATCTGATGGTGGAATCAGACAGCTTAGTGGCAATTATTTTCCTCACAAAGAAATCCCCAATTTGGAA
GGACGTGGAGGCCTTGGTGATGTTCATCTGGAATTTAAGCCACTCTTTCGAAGCTAAGGAAGACGTGACCTGCAAAACCAGCAAAAACCGCTGCACACCGGTGTGGTGTA
GGCCACACCGCCTCCGATGCCTAAGTCAGAAAACAGAGGAGGCGTTGGAAAGGTTTTTAGGAATTCGGAGGTGTTTCGGGACGAACCAGGCGGAACCGGGGCATCAGGGG
CCGAAAGGAGGTGACCGAGCCCGACCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTTTGTCGAGGCTGACCATATGGGTCGGGCCATGTTGGCCTTACCCTTTGGT
CCGGTCTTCCTCTGGGTCGATTCTCTGGTCCTACCTTTGTCCGATTGTCCTCGTCAGCTCCTTGTTCGTCAGTGTGGCTGAGCTCCTTAAGCCCGATTTAAGAGTACGAC
TCTTGTCTCGCGCTTCGGCTGTGCTAAAAAGTGAAGTGACTGAGAACTCGAACCAGTCATGCTGCTCTGAATGCGTGCCTGAGGGTTGGCTTCGGAGCTGGGATGCTCGA
CCTTGGCCTTGGCATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCTAA
Protein sequenceShow/hide protein sequence
MCVHNEPIPPLIQRSQWIARYLESYRSVNEKNSSTSISNLRSNPSLFNTVACWTPPPANFWKLNTDAACDPSSSATGYGLICRNGEGDILFSSALFEDIHLEAHLAELHA
IFKGMKKTLSLGCSNLMVESDSLVAIIFLTKKSPIWKDVEALVMFIWNLSHSFEAKEDVTCKTSKNRCTPVWCRPHRLRCLSQKTEEALERFLGIRRCFGTNQAEPGHQG
PKGGDRARPAQAGRMVGLGLLSRLTIWVGPCWPYPLVRSSSGSILWSYLCPIVLVSSLFVSVAELLKPDLRVRLLSRASAVLKSEVTENSNQSCCSECVPEGWLRSWDAR
PWPWHEAEHFFCFAC