CuGenDBv2

Gene ID	Spg033984
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA ligase
Genome location	scaffold13:37042427..37042837
RNA-Seq Expression	Spg033984
Synteny	Spg033984
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008445585.1 PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]

5.7e-33

64.1

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Query:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKER
        S CCFH          PS TP  SPCSWLKSTA E   LL RCRY +AR+ R R  YL S DFSYDSSSYALNF+DDCR+D +FPFRDFTAR PP +K+R
Subjt:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKER

Query:  VPAA-KFAGSQDGITIS
        +PAA KFAGS   I IS
Subjt:  VPAA-KFAGSQDGITIS

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]

4.8e-40

69.34

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCREDD
        MLADFH SSS AHKLKSSI CF  S+       PS   T+SPCSW KSTA+EFP+LLDRCRYLVARIGRG R+RY  S DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCREDD

Query:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC
        EFP R+F ARLP     R+PAAKFAGSQ G+ T++AC
Subjt:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]

6.5e-53

77.27

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PTRSPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCREDDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFR+FTAR PP IKERVPAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]

5.5e-52

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT+SPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDF+YDSSSYALNF+DDCREDDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFRDFTAR PP IKER PAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]

3.2e-52

76.52

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT SPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCREDDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFR+FTAR PP IKERVPAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BDX7 uncharacterized protein LOC103488565

2.8e-33

64.1

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Query:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKER
        S CCFH          PS TP  SPCSWLKSTA E   LL RCRY +AR+ R R  YL S DFSYDSSSYALNF+DDCR+D +FPFRDFTAR PP +K+R
Subjt:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARLPPAIKER

Query:  VPAA-KFAGSQDGITIS
        +PAA KFAGS   I IS
Subjt:  VPAA-KFAGSQDGITIS

A0A6J1BQU1 uncharacterized protein LOC111004768

2.3e-40

69.34

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCREDD
        MLADFH SSS AHKLKSSI CF  S+       PS   T+SPCSW KSTA+EFP+LLDRCRYLVARIGRG R+RY  S DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCREDD

Query:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC
        EFP R+F ARLP     R+PAAKFAGSQ G+ T++AC
Subjt:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC

A0A6J1FP70 uncharacterized protein LOC111446022

9.0e-24

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDD-CREDD
        ML D+H   S   KLKSSI CF   +  DFL++   +  R+P S LKS A+EFPEL   CR LVARIGR R+RY  S DF YD SSYALNFED+  R+DD
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDD-CREDD

Query:  EFPFRDFTARLP--PAIKERVPAAK
        EFP RDF +RLP  P    R+  AK
Subjt:  EFPFRDFTARLP--PAIKERVPAAK

A0A6J1HE78 uncharacterized protein LOC111462741

3.2e-53

77.27

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PTRSPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCREDDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFR+FTAR PP IKERVPAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

A0A6J1K7R1 uncharacterized protein LOC111492424

2.7e-52

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT+SPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDF+YDSSSYALNF+DDCREDDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFRDFTAR PP IKER PAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G11070.1 unknown protein

2.9e-14

40.94

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Query:  HKLKSSICCFHGS---EDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARI-----------------GRGRKRYLGSVDFSYDSSSYALNFE
        H+++S ICC   +   E +  +    +   RSP  WLKSTA E  EL DRCR + +RI                     + Y G  DFSYD  SYALNFE
Subjt:  HKLKSSICCFHGS---EDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARI-----------------GRGRKRYLGSVDFSYDSSSYALNFE

Query:  DDCREDDEFPFRDFTARLP--PAIKER
        D+ R DD+  F +FTARLP  P  K R
Subjt:  DDCREDDEFPFRDFTARLP--PAIKER

AT5G35090.1 unknown protein

3.1e-08

34.53

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Query:  SLAHKLKSSIC---CF-------HGSEDDDFLQSPSKT--PTRSP-CSWLKSTASEFPELL----DRCRYLVARI--------GRGRKRYLGSVDFSYDS
        SL  KLKS  C   CF       H +  DD   SP  T   T+SP    +K+ +      L    ++C+ L+ R+        G G+     + DF YD 
Subjt:  SLAHKLKSSIC---CF-------HGSEDDDFLQSPSKT--PTRSP-CSWLKSTASEFPELL----DRCRYLVARI--------GRGRKRYLGSVDFSYDS

Query:  SSYALNFEDDCRED--DEFPFRDFTARLPPAIKERVPAA
        SSYALNF+    +D  D FP R+F+ARLP +      AA
Subjt:  SSYALNFEDDCRED--DEFPFRDFTARLPPAIKERVPAA

Sequences

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CDS sequence

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ATGTTGGCCGATTTTCATCAGTCTTCTTCTCTCGCTCACAAGCTCAAGTCCTCCATCTGCTGTTTCCATGGCTCCGAAGATGATGATTTTCTCCAGTCTCCGTCCAAGAC
GCCGACCAGATCGCCGTGTTCGTGGTTGAAATCGACGGCCAGTGAATTCCCTGAGTTGCTCGACCGGTGCCGCTACCTGGTGGCTCGGATCGGTCGCGGCCGAAAGAGGT
ACCTTGGCTCCGTCGACTTTAGCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTTCCCTTCAGGGATTTTACGGCCAGATTG
CCGCCGGCGATCAAGGAGCGTGTTCCGGCGGCCAAATTTGCCGGATCTCAAGATGGAATCACGATTTCCGCTTGTGGATGA

mRNA sequence

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Protein sequence

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MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCREDDEFPFRDFTARL
PPAIKERVPAAKFAGSQDGITISACG

Spg033984 (gene) of Sponge gourd (cylindrica) v1 genome