CuGenDBv2

Gene ID	Spg034006
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein RRC1-like isoform X1
Genome location	scaffold13:37343283..37344734
RNA-Seq Expression	Spg034006
Synteny	Spg034006
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020418.1 Protein RRC1 [Cucurbita argyrosperma subsp. argyrosperma]

3.5e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

XP_011650200.2 protein RRC1 [Cucumis sativus]

3.5e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

XP_023002206.1 protein RRC1-like isoform X1 [Cucurbita maxima]

3.5e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

XP_023522039.1 protein RRC1-like [Cucurbita pepo subsp. pepo]

3.5e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

XP_023537856.1 protein RRC1-like [Cucurbita pepo subsp. pepo]

3.5e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM94 Uncharacterized protein

1.7e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

A0A1S3BD28 protein RRC1-like isoform X1

1.7e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

A0A5A7VGM8 Protein RRC1-like isoform X1

1.7e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

A0A6J1GHY8 protein RRC1

1.7e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

A0A6J1KKM9 protein RRC1-like isoform X1

1.7e-36

98.84

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNE+LKSESEGEKSKDGVSVPKKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

SwissProt top hits

e value

%identity

Alignment

Q9C5J3 Protein RRC1

4.3e-29

82.56

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Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEA+KK+ EDETARLY EFVESFQGDNA  +KTFVRGGTINP ++ K +SEGEKSKDG SV KKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

Arabidopsis top hits

e value

%identity

Alignment

AT5G25060.1 RNA recognition motif (RRM)-containing protein

3.1e-30

82.56

Show/hide

Query:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR
        MSSFSITRKKTPFQKHREEEEA+KK+ EDETARLY EFVESFQGDNA  +KTFVRGGTINP ++ K +SEGEKSKDG SV KKGSR
Subjt:  MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

Sequences

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CDS sequence

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ATGAGTTCATTTTCCATCACTCGGAAAAAGACTCCTTTCCAGAAACACAGAGAGGAGGAAGAGGCAAAGAAGAAGAGAGAGGAGGATGAAACTGCTCGATTGTATGCGGA
ATTTGTGGAGTCATTTCAAGGTGATAATGCACCTGGGTCTAAGACTTTTGTTCGTGGAGGAACTATTAACCCCAATGAGAGATTGAAGAGTGAATCTGAGGGTGAAAAGT
CCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTAA

mRNA sequence

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Protein sequence

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MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERLKSESEGEKSKDGVSVPKKGSR

Spg034006 (gene) of Sponge gourd (cylindrica) v1 genome