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Spg034010 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034010
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold13:33218876..33221431
RNA-Seq ExpressionSpg034010
SyntenySpg034010
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]2.8e-1680Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.8e-1671.43Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G  SEIN
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
KAE8649781.1 hypothetical protein Csa_012983 [Cucumis sativus]2.8e-1672.06Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEIN
        +S LFLLSNICNLVP+RLDS NYVLWK+Q+SSILKAHSLFGHIDDSLP P K  K  +  A    EIN
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEIN
TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.8e-1671.43Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G  SEIN
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-1659.52Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEINLSTSGFLFGLSYTEGI
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G+   ++  G+L  LS  + +
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEINLSTSGFLFGLSYTEGI
TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.4e-1680Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
        LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIES
A0A5A7UTE5 Putative mitochondrial protein1.4e-1671.43Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G  SEIN
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
A0A5A7UZE5 Putative mitochondrial protein1.4e-1671.43Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G  SEIN
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
A0A5D3BEU0 Putative mitochondrial protein1.4e-1671.43Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G  SEIN
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAG--SEIN
A0A5D3CCL2 Retrotransposon protein1.4e-1659.52Show/hide
Query:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEINLSTSGFLFGLSYTEGI
        +S LFLLSNICNLVP+RLDSTNYVLWK+Q+SSILKAHSLFGHIDD+LP P K    H   +  G+   ++  G+L  LS  + +
Subjt:  SSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEINLSTSGFLFGLSYTEGI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCCTCTGTTTCTTCTGTCAAATATATGCAATTTGGTGCCACTTCGCTTGGACTCTACAAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGC
CCACTCCCTTTTCGGTCATATTGACGATTCTCTTCCCAAACCAAGCAAGTTTGGAAAAGCTCATGCAAAGCCAGCTATTGCAGGATCTGAGATCAACCTGTCAACCTCTG
GTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCC
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCCTCTGTTTCTTCTGTCAAATATATGCAATTTGGTGCCACTTCGCTTGGACTCTACAAATTATGTACTTTGGAAGTTCCAAATCTCTTCCATTCTGAAAGC
CCACTCCCTTTTCGGTCATATTGACGATTCTCTTCCCAAACCAAGCAAGTTTGGAAAAGCTCATGCAAAGCCAGCTATTGCAGGATCTGAGATCAACCTGTCAACCTCTG
GTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCC
Protein sequenceShow/hide protein sequence
MSSPLFLLSNICNLVPLRLDSTNYVLWKFQISSILKAHSLFGHIDDSLPKPSKFGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPV
PDTLPTSAESSRSSSSTWLELYIES