; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034027 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034027
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H domain
Genome locationscaffold13:34477116..34477682
RNA-Seq ExpressionSpg034027
SyntenySpg034027
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.9e-1129.12Show/hide
Query:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKA--------EIHNHLAATNIIQHNIEANL---KEWESSYLKTHPPKRPRNL-VSQAQWVNPS
        R  W  KD W+ +   L+ EE+   +++ W+IWE  N++        E     +    I  NI+      +   S     + P+   NL +   +W  P 
Subjt:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKA--------EIHNHLAATNIIQHNIEANL---KEWESSYLKTHPPKRPRNL-VSQAQWVNPS

Query:  SNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        +N WK+N+D +W+E+   GG+ WI+ D  G ++  G  +I +K  I  LE   I+ GL Q  +  +R   P+ +ESD++EV+
Subjt:  SNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.0e-1132.5Show/hide
Query:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE
        +EE    +I+ W+IWE  NK+        T  IQ  I+  +      ++ LK     +  +L+ +      AQW  P+SNSWK+N++ AW      GG+ 
Subjt:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE

Query:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        WI+RD  G +I    + I  +  I  LE  AI EGL+ +     R   P+ +ESD+LE +
Subjt:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.8e-1632.61Show/hide
Query:  FSLCREDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVN
        F + R +W  K+YW+ +     +EE    +I+  +IWE  NK+      + T  IQ  I          + NLK     +   HP +R  +  ++A+W  
Subjt:  FSLCREDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVN

Query:  PSSNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        P+SNSWK+N+D AW       G+ WI+RD  G +I  G + I  +  I  LE  AI EGL+ +     R   P+ +ESD+LE +
Subjt:  PSSNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]2.6e-1532.78Show/hide
Query:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVNPSSN
        R +W  K+YW+ +     +EE    +I+  +IWE  NK+      + T  IQ  I          + NLK     +   HP +R  +  ++A+W  P+SN
Subjt:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVNPSSN

Query:  SWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        SWK+N+D AW       G+ WI+RD  G +I  G + I  +  I  LE  AI EGL+ +     R   P+ +ESD+LE +
Subjt:  SWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.5e-1131.52Show/hide
Query:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE
        +EE    +I+ W+IWE  NK+      + T  IQ  I+  +       + LK     +  +L+ +      A+W  P+SNSWK+N+D AW      GG+ 
Subjt:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE

Query:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQV-FDTCNRLG----IPLEVESDALEVV
        WI+RD  G +I    + I  +  I  LE  AI EGL+ +  + C  +      P+ +ESD+LE +
Subjt:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQV-FDTCNRLG----IPLEVESDALEVV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.9e-1232.5Show/hide
Query:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE
        +EE    +I+ W+IWE  NK+        T  IQ  I+  +      ++ LK     +  +L+ +      AQW  P+SNSWK+N++ AW      GG+ 
Subjt:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE

Query:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        WI+RD  G +I    + I  +  I  LE  AI EGL+ +     R   P+ +ESD+LE +
Subjt:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

A0A6J1CQG0 uncharacterized protein LOC1110132161.4e-1129.12Show/hide
Query:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKA--------EIHNHLAATNIIQHNIEANL---KEWESSYLKTHPPKRPRNL-VSQAQWVNPS
        R  W  KD W+ +   L+ EE+   +++ W+IWE  N++        E     +    I  NI+      +   S     + P+   NL +   +W  P 
Subjt:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKA--------EIHNHLAATNIIQHNIEANL---KEWESSYLKTHPPKRPRNL-VSQAQWVNPS

Query:  SNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        +N WK+N+D +W+E+   GG+ WI+ D  G ++  G  +I +K  I  LE   I+ GL Q  +  +R   P+ +ESD++EV+
Subjt:  SNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.3e-1632.61Show/hide
Query:  FSLCREDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVN
        F + R +W  K+YW+ +     +EE    +I+  +IWE  NK+      + T  IQ  I          + NLK     +   HP +R  +  ++A+W  
Subjt:  FSLCREDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVN

Query:  PSSNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        P+SNSWK+N+D AW       G+ WI+RD  G +I  G + I  +  I  LE  AI EGL+ +     R   P+ +ESD+LE +
Subjt:  PSSNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.2e-1532.78Show/hide
Query:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVNPSSN
        R +W  K+YW+ +     +EE    +I+  +IWE  NK+      + T  IQ  I          + NLK     +   HP +R  +  ++A+W  P+SN
Subjt:  REDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNI----------EANLKEWESSYLKTHPPKRPRNLVSQAQWVNPSSN

Query:  SWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV
        SWK+N+D AW       G+ WI+RD  G +I  G + I  +  I  LE  AI EGL+ +     R   P+ +ESD+LE +
Subjt:  SWKMNSDTAWNEKYGRGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVV

A0A6J1DSV1 uncharacterized protein LOC1110236083.2e-1131.52Show/hide
Query:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE
        +EE    +I+ W+IWE  NK+      + T  IQ  I+  +       + LK     +  +L+ +      A+W  P+SNSWK+N+D AW      GG+ 
Subjt:  KEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANL--KEWESSYLKTHPPKRPRNLVSQ------AQWVNPSSNSWKMNSDTAWNEKYGRGGLE

Query:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQV-FDTCNRLG----IPLEVESDALEVV
        WI+RD  G +I    + I  +  I  LE  AI EGL+ +  + C  +      P+ +ESD+LE +
Subjt:  WIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQV-FDTCNRLG----IPLEVESDALEVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0628.1Show/hide
Query:  LMWKIWEFGNKAEIHNHLAATNIIQHNIEANL---KEWESSYLKTHPPKRPRNL--VSQAQWVNPSSNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLIC
        LMW+IW+ GN   + NH       Q  +E  L   KEW  + +        RN       +W  P  +  K N D + +E+    GL WI+R+S G++I 
Subjt:  LMWKIWEFGNKAEIHNHLAATNIIQHNIEANL---KEWESSYLKTHPPKRPRNL--VSQAQWVNPSSNSWKMNSDTAWNEKYGRGGLEWIVRDSDGSLIC

Query:  FGMKQIYKKWAIKNLEACAIL
         GM +   +   +  E   ++
Subjt:  FGMKQIYKKWAIKNLEACAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCTTTATGCAGGGAAGATTGGTTGGCTAAAGATTACTGGGACCGGATGAAAGCTAACTTAAACAAAGAAGAGATTGATGAAGACATTATCCTCATGTGGAAAAT
ATGGGAATTCGGAAACAAAGCAGAAATTCACAATCACCTAGCAGCAACAAACATTATTCAGCACAATATTGAAGCAAATTTAAAAGAATGGGAGTCTTCTTACCTCAAGA
CCCACCCTCCGAAAAGGCCTAGGAACCTTGTGAGTCAAGCTCAGTGGGTGAATCCGTCGTCAAATTCCTGGAAAATGAACTCCGACACTGCCTGGAATGAGAAATATGGT
CGTGGAGGACTCGAATGGATCGTGCGTGACTCAGACGGATCTCTGATCTGTTTTGGAATGAAACAAATTTATAAGAAATGGGCTATAAAAAATTTGGAAGCGTGTGCTAT
TCTAGAAGGCCTCAAGCAAGTATTTGATACCTGCAATCGACTTGGTATTCCTCTGGAAGTTGAATCGGATGCCTTAGAGGTCGTCGTCAACGTCCTCAACGGGGATTCGG
AAGACATATCAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCTTTATGCAGGGAAGATTGGTTGGCTAAAGATTACTGGGACCGGATGAAAGCTAACTTAAACAAAGAAGAGATTGATGAAGACATTATCCTCATGTGGAAAAT
ATGGGAATTCGGAAACAAAGCAGAAATTCACAATCACCTAGCAGCAACAAACATTATTCAGCACAATATTGAAGCAAATTTAAAAGAATGGGAGTCTTCTTACCTCAAGA
CCCACCCTCCGAAAAGGCCTAGGAACCTTGTGAGTCAAGCTCAGTGGGTGAATCCGTCGTCAAATTCCTGGAAAATGAACTCCGACACTGCCTGGAATGAGAAATATGGT
CGTGGAGGACTCGAATGGATCGTGCGTGACTCAGACGGATCTCTGATCTGTTTTGGAATGAAACAAATTTATAAGAAATGGGCTATAAAAAATTTGGAAGCGTGTGCTAT
TCTAGAAGGCCTCAAGCAAGTATTTGATACCTGCAATCGACTTGGTATTCCTCTGGAAGTTGAATCGGATGCCTTAGAGGTCGTCGTCAACGTCCTCAACGGGGATTCGG
AAGACATATCAGACTGA
Protein sequenceShow/hide protein sequence
MFSLCREDWLAKDYWDRMKANLNKEEIDEDIILMWKIWEFGNKAEIHNHLAATNIIQHNIEANLKEWESSYLKTHPPKRPRNLVSQAQWVNPSSNSWKMNSDTAWNEKYG
RGGLEWIVRDSDGSLICFGMKQIYKKWAIKNLEACAILEGLKQVFDTCNRLGIPLEVESDALEVVVNVLNGDSEDISD