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Spg034090 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034090
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold13:35464339..35468844
RNA-Seq ExpressionSpg034090
SyntenySpg034090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.6e-0844.29Show/hide
Query:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF
        +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S S LF+NY ASSIALN  AF
Subjt:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-1123.51Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------
        + NL  +I  F+ ASGLSIN NKS+IS +NV ++R+ Q+AS+WG S   LPI+YLG  LG K +  SFW+ V +KI                        
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------

Query:  ----------------------------------------------------------------------------------------------DLYGEE
                                                                                                      DL  + 
Subjt:  ----------------------------------------------------------------------------------------------DLYGEE

Query:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS
         F                                            +  +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S 
Subjt:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS

Query:  SKLFTNYDASSIALNWKAF
        S LFTNY ASSIALN  AF
Subjt:  SKLFTNYDASSIALNWKAF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.7e-1253.25Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID
        + NL  +I  F+ ASGLSIN NKS+IS +NVD+SR+ Q+AS+WG S   LPI+YLG  LG K +  +FW+ V +KI+
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.6e-0844.29Show/hide
Query:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF
        +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S S LF+NY ASSIALN  AF
Subjt:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-1153.25Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID
        + NL  +I  F+ ASGLSIN NKS+IS +NVD+SR+ Q+AS+WG S   LPI+YLG  LG K    +FW+ V +KI+
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID

TYK24536.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.9e-1123.51Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------
        + NL  +I  F+ ASGLSIN NKS+IS +NV ++R+ Q+AS+WG S   LPI+YLG  LG K +  SFW+ V +KI                        
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------

Query:  ----------------------------------------------------------------------------------------------DLYGEE
                                                                                                      DL  + 
Subjt:  ----------------------------------------------------------------------------------------------DLYGEE

Query:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS
         F                                            +  +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S 
Subjt:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS

Query:  SKLFTNYDASSIALNWKAF
        S LFTNY ASSIALN  AF
Subjt:  SKLFTNYDASSIALNWKAF

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]7.6e-0844.29Show/hide
Query:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF
        +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S S LF+NY ASSIALN  AF
Subjt:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]1.9e-1153.25Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID
        + NL  +I  F+ ASGLSIN NKS+IS +NVD+SR+ Q+AS+WG S   LPI+YLG  LG K    +FW+ V +KI+
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID

TrEMBL top hitse value%identityAlignment
A0A5A7TCY9 LINE-1 retrotransposable element ORF2 protein9.3e-1223.51Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------
        + NL  +I  F+ ASGLSIN NKS+IS +NV ++R+ Q+AS+WG S   LPI+YLG  LG K +  SFW+ V +KI                        
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------

Query:  ----------------------------------------------------------------------------------------------DLYGEE
                                                                                                      DL  + 
Subjt:  ----------------------------------------------------------------------------------------------DLYGEE

Query:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS
         F                                            +  +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S 
Subjt:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS

Query:  SKLFTNYDASSIALNWKAF
        S LFTNY ASSIALN  AF
Subjt:  SKLFTNYDASSIALNWKAF

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein9.3e-1251.95Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID
        + NL  +I  F+ ASGLSIN NKS+IS +NVD++R+ Q+AS+WG S   LPI+YLG  LG K +  +FW+ V +KI+
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein4.2e-1253.25Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID
        + NL  +I  F+ ASGLSIN NKS+IS +NVD+SR+ Q+AS+WG S   LPI+YLG  LG K +  +FW+ V +KI+
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein3.7e-0844.29Show/hide
Query:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF
        +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S S LF+NY ASSIALN  AF
Subjt:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein9.3e-1253.25Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID
        + NL  +I  F+ ASGLSIN NKS+IS +NVD+SR+ Q+AS+WG S   LPI+YLG  LG K    +FW+ V +KI+
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKID

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein3.7e-0844.29Show/hide
Query:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF
        +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S S LF+NY ASSIALN  AF
Subjt:  SQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein9.3e-1223.51Show/hide
Query:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------
        + NL  +I  F+ ASGLSIN NKS+IS +NV ++R+ Q+AS+WG S   LPI+YLG  LG K +  SFW+ V +KI                        
Subjt:  LDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALLGDKPSKVSFWRPVIDKI------------------------

Query:  ----------------------------------------------------------------------------------------------DLYGEE
                                                                                                      DL  + 
Subjt:  ----------------------------------------------------------------------------------------------DLYGEE

Query:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS
         F                                            +  +++ +++    A+ LW +W ERN+RIF       + IW+DI A    W S 
Subjt:  AF------------------------------------------ILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSS

Query:  SKLFTNYDASSIALNWKAF
        S LFTNY ASSIALN  AF
Subjt:  SKLFTNYDASSIALNWKAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGGTATTTAAACCCTTCTTCATCGCTGGGGAAAGGATCCCGAACTCTATTCTCTACTCTCTCCTCTTGCTCTCTTGCTCTCCTCCTTTCGCTTTCTGACTTAAG
CATCGGAGGCGGTATGGCAAGCACCACACCGATGTGCAGAATGCTTGACAACCTTTTCTTTGTGATTAAATCTTTCGAACAAGCTTCTGGCCTTAGCATAAATTTCAACA
AGTCATCTATATCCAGTGTTAATGTGGATTCTTCCAGATCGATCCAGGTGGCTTCTAAATGGGGCTGTTCTTTCTCTTCTCTCCCTATTTCGTACCTGGGAGCTCTTCTT
GGAGACAAGCCTTCAAAGGTTTCCTTTTGGAGACCAGTGATTGACAAAATTGATCTCTATGGCGAGGAGGCTTTTATCCTTCAGGGCAATTCTCAAAGGAGAATTCTGAT
TCAGACTTTATCTGCTGCGATTCTGTGGTTTTTATGGACGGAGCGAAACTCCCGAATTTTCAAAAATGTTGCCCCGCCACCCTCTCCGATATGGGACGATATAGTCGCTA
CTACATCCTTCTGGGTCTCCTCTTCTAAGCTTTTTACTAACTACGATGCATCTTCAATAGCTTTGAATTGGAAGGCCTTCCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGGTATTTAAACCCTTCTTCATCGCTGGGGAAAGGATCCCGAACTCTATTCTCTACTCTCTCCTCTTGCTCTCTTGCTCTCCTCCTTTCGCTTTCTGACTTAAG
CATCGGAGGCGGTATGGCAAGCACCACACCGATGTGCAGAATGCTTGACAACCTTTTCTTTGTGATTAAATCTTTCGAACAAGCTTCTGGCCTTAGCATAAATTTCAACA
AGTCATCTATATCCAGTGTTAATGTGGATTCTTCCAGATCGATCCAGGTGGCTTCTAAATGGGGCTGTTCTTTCTCTTCTCTCCCTATTTCGTACCTGGGAGCTCTTCTT
GGAGACAAGCCTTCAAAGGTTTCCTTTTGGAGACCAGTGATTGACAAAATTGATCTCTATGGCGAGGAGGCTTTTATCCTTCAGGGCAATTCTCAAAGGAGAATTCTGAT
TCAGACTTTATCTGCTGCGATTCTGTGGTTTTTATGGACGGAGCGAAACTCCCGAATTTTCAAAAATGTTGCCCCGCCACCCTCTCCGATATGGGACGATATAGTCGCTA
CTACATCCTTCTGGGTCTCCTCTTCTAAGCTTTTTACTAACTACGATGCATCTTCAATAGCTTTGAATTGGAAGGCCTTCCTGTAG
Protein sequenceShow/hide protein sequence
MSRYLNPSSSLGKGSRTLFSTLSSCSLALLLSLSDLSIGGGMASTTPMCRMLDNLFFVIKSFEQASGLSINFNKSSISSVNVDSSRSIQVASKWGCSFSSLPISYLGALL
GDKPSKVSFWRPVIDKIDLYGEEAFILQGNSQRRILIQTLSAAILWFLWTERNSRIFKNVAPPPSPIWDDIVATTSFWVSSSKLFTNYDASSIALNWKAFL