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Spg034166 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034166
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontapetum determinant 1
Genome locationscaffold13:37328945..37333304
RNA-Seq ExpressionSpg034166
SyntenySpg034166
Gene Ontology termsGO:0001709 - cell fate determination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFZ17345.1 tapetum determinant protein [Actinidia rufa]3.8e-3265Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  +DI ITQG  SP  NGIPTY VEI N C +GC +SG+HL CGWFSSA+LINP +FKR+ F+DCLVN G+ +  G T+SFQYA TF++PLSVSS+VC
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

KAF7135610.1 hypothetical protein RHSIM_Rhsim08G0193300 [Rhododendron simsii]8.5e-3263.73Show/hide
Query:  EHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSI
        + KC  +DI I QG  SP  +GIPTY VEI N C TGC +SG+HL CGWFSSA+LINP VFKR+ ++DCLVN+GR +  G TVSFQYA TF++PLSVSS+
Subjt:  EHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSI

Query:  VC
        +C
Subjt:  VC

XP_009757809.1 PREDICTED: uncharacterized protein LOC104210578 isoform X2 [Nicotiana sylvestris]1.1e-3164Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

XP_016469596.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana tabacum]1.1e-3164Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

XP_019253597.1 PREDICTED: protein TAPETUM DETERMINANT 1-like [Nicotiana attenuata]8.5e-3265Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G TVSFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

TrEMBL top hitse value%identityAlignment
A0A1J6IUM0 Protein tapetum determinant 14.1e-3265Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G TVSFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

A0A1S3ZZ54 protein TAPETUM DETERMINANT 1-like5.4e-3264Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

A0A1U7UUC7 uncharacterized protein LOC104210578 isoform X15.4e-3264Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

A0A1U7V6E2 uncharacterized protein LOC104210578 isoform X25.4e-3264Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  TDI I QG  +P  +GIPTY VEI N C +GC +SG+HLKCGWFSSA+LINP +FKR+ FDDCLVN G+ +  G T+SFQYA TF++PLSVSS++C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

A0A7J0H2V1 Tapetum determinant protein1.8e-3265Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC  +DI ITQG  SP  NGIPTY VEI N C +GC +SG+HL CGWFSSA+LINP +FKR+ F+DCLVN G+ +  G T+SFQYA TF++PLSVSS+VC
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058351.6e-0429.7Show/hide
Query:  GKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFD--DCLVNSGRVIPPGTTVSFQYATTFKFP
        GKS E     T +   +G+          + VE+ N+C   C +  L LKC  F  + L++P+  + ++    +C+VN G  + P  T+SF Y+ T +F 
Subjt:  GKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFD--DCLVNSGRVIPPGTTVSFQYATTFKFP

Query:  L
        L
Subjt:  L

Q1G3T1 TPD1 protein homolog 12.2e-2749.49Show/hide
Query:  CENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        C   DI + QG  +P  +G+P+Y VEI N C + C ++ +H+ CGWFSS +L+NP VF+R+ +DDCLVN G+ + PG ++SFQYA +F +PLSV+S+ C
Subjt:  CENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

Q2QR54 TPD1 protein homolog 1A2.6e-2346.53Show/hide
Query:  DIAITQGEGSPQFNGIPTYIVEITNQCRTG------CRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIV
        DIAI QG  +P  +G+P Y V++ N+C  G      C ++G+H++CGWFSS  L++P VF+R+  DDCL+N GR +  G TVSF+Y  +F + LSVS   
Subjt:  DIAITQGEGSPQFNGIPTYIVEITNQCRTG------CRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIV

Query:  C
        C
Subjt:  C

Q6TLJ2 Protein TAPETUM DETERMINANT 14.0e-3259.41Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC++TDI + Q    P  NGIP Y+VEITNQC +GC +S +H+ CGWFSSAKLINP VFKRI +DDCLVN+G+ +P G+T+SF YA TF + LSV+ + C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

Query:  S
        +
Subjt:  S

Q8S6P9 TPD1 protein homolog 1B2.0e-2042.86Show/hide
Query:  KSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSV
        + Q   C   ++ + Q       +GIPTY VEI N C T C V  +H+ CG F+SA+L++PS F+RI F+DCLV  G  + P   VSFQY+ +F +PL+V
Subjt:  KSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSV

Query:  SSIVC
        +++ C
Subjt:  SSIVC

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein1.1e-0529.7Show/hide
Query:  GKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFD--DCLVNSGRVIPPGTTVSFQYATTFKFP
        GKS E     T +   +G+          + VE+ N+C   C +  L LKC  F  + L++P+  + ++    +C+VN G  + P  T+SF Y+ T +F 
Subjt:  GKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFD--DCLVNSGRVIPPGTTVSFQYATTFKFP

Query:  L
        L
Subjt:  L

AT1G32583.1 FUNCTIONS IN: molecular_function unknown1.6e-2849.49Show/hide
Query:  CENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        C   DI + QG  +P  +G+P+Y VEI N C + C ++ +H+ CGWFSS +L+NP VF+R+ +DDCLVN G+ + PG ++SFQYA +F +PLSV+S+ C
Subjt:  CENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

AT4G24972.1 tapetum determinant 12.8e-3359.41Show/hide
Query:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC
        KC++TDI + Q    P  NGIP Y+VEITNQC +GC +S +H+ CGWFSSAKLINP VFKRI +DDCLVN+G+ +P G+T+SF YA TF + LSV+ + C
Subjt:  KCENTDIAITQGEGSPQFNGIPTYIVEITNQCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVC

Query:  S
        +
Subjt:  S


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAACCAGTCGAGAAATCGGTCTTCGCCAGAAGCCTCCCTTGAGATAGAATCGGATTCCGTCGAAATAGTGAAAGCAATCAATGGGGAATCGCTTGACAGATCAGA
GGCGGCTCAGATTGTGAAGGAGATTGCTGATATCTCTGTTGGTCTGGAAGTCTCCGTTGCTCACTGCTGTAGGAATAGCAATGTTCTTGCCCACTCTATCGCTCGAAGCT
GTGGAAAGAGCCAAGAGCACAAATGTGAAAACACTGACATAGCAATAACACAAGGAGAAGGCTCGCCGCAGTTCAATGGCATCCCTACGTACATCGTGGAGATAACTAAC
CAGTGCCGAACCGGCTGCAGGGTTTCCGGTCTGCATCTGAAATGCGGTTGGTTCAGCTCGGCCAAGTTGATAAACCCATCGGTTTTTAAGCGCATTGCCTTCGACGATTG
CCTTGTCAACAGTGGAAGGGTCATACCTCCTGGCACTACAGTTTCGTTTCAATATGCTACCACCTTCAAGTTTCCACTCTCTGTTTCCTCCATTGTATGCTCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAACCAGTCGAGAAATCGGTCTTCGCCAGAAGCCTCCCTTGAGATAGAATCGGATTCCGTCGAAATAGTGAAAGCAATCAATGGGGAATCGCTTGACAGATCAGA
GGCGGCTCAGATTGTGAAGGAGATTGCTGATATCTCTGTTGGTCTGGAAGTCTCCGTTGCTCACTGCTGTAGGAATAGCAATGTTCTTGCCCACTCTATCGCTCGAAGCT
GTGGAAAGAGCCAAGAGCACAAATGTGAAAACACTGACATAGCAATAACACAAGGAGAAGGCTCGCCGCAGTTCAATGGCATCCCTACGTACATCGTGGAGATAACTAAC
CAGTGCCGAACCGGCTGCAGGGTTTCCGGTCTGCATCTGAAATGCGGTTGGTTCAGCTCGGCCAAGTTGATAAACCCATCGGTTTTTAAGCGCATTGCCTTCGACGATTG
CCTTGTCAACAGTGGAAGGGTCATACCTCCTGGCACTACAGTTTCGTTTCAATATGCTACCACCTTCAAGTTTCCACTCTCTGTTTCCTCCATTGTATGCTCCAAATGA
Protein sequenceShow/hide protein sequence
MENQSRNRSSPEASLEIESDSVEIVKAINGESLDRSEAAQIVKEIADISVGLEVSVAHCCRNSNVLAHSIARSCGKSQEHKCENTDIAITQGEGSPQFNGIPTYIVEITN
QCRTGCRVSGLHLKCGWFSSAKLINPSVFKRIAFDDCLVNSGRVIPPGTTVSFQYATTFKFPLSVSSIVCSK