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Spg034180 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034180
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L39
Genome locationscaffold13:37112100..37112966
RNA-Seq ExpressionSpg034180
SyntenySpg034180
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1823142.1 unnamed protein product [Ananas comosus var. bracteatus]1.0e-2066.67Show/hide
Query:  VFACRAVRSPRSRFPNL--QDGNSFFLLVILFLYSC-FRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        VF C    S R+       +DG  F  L  L+  S     PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  VFACRAVRSPRSRFPNL--QDGNSFFLLVILFLYSC-FRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAF3452997.1 hypothetical protein FNV43_RR03430 [Rhamnella rubrinervis]2.2e-2080.3Show/hide
Query:  SFFLLVILFLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        S+F L  L  +   + PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  SFFLLVILFLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7024013.1 60S ribosomal protein L39-1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-2176Show/hide
Query:  RFPNLQDGNSFFLLVILFLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R  N +DGN FFL            PSHKTF IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFPNLQDGNSFFLLVILFLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2085.07Show/hide
Query:  SFFLLVILFLYSCF-RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        S FL V L   S F + PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SFFLLVILFLYSCF-RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]3.5e-2177.33Show/hide
Query:  FPNLQDGNSFFLLVILFLYSCF-RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F  ++   S FL V L   S F + PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FPNLQDGNSFFLLVILFLYSCF-RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
TrEMBL top hitse value%identityAlignment
A0A2P5ANB0 Ribosomal protein2.4e-2096.15Show/hide
Query:  RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A3L6RVG2 60S ribosomal protein L391.9e-2087.93Show/hide
Query:  FLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F  S  R PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  FLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A540NJE1 Uncharacterized protein1.4e-2056.12Show/hide
Query:  FNALSESRVFACRAVRSPRSRFPNLQDGNSFFLLVILFLYS---CFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F  +  S + +   +R+      N     SF++ +    Y+      FPSHK+F IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  FNALSESRVFACRAVRSPRSRFPNLQDGNSFFLLVILFLYS---CFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1HDM7 uncharacterized protein LOC1114629681.7e-2177.33Show/hide
Query:  FPNLQDGNSFFLLVILFLYSCF-RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F  ++   S FL V L   S F + PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  FPNLQDGNSFFLLVILFLYSCF-RFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6V7NWZ1 BURP domain-containing protein4.9e-2166.67Show/hide
Query:  VFACRAVRSPRSRFPNL--QDGNSFFLLVILFLYSC-FRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        VF C    S R+       +DG  F  L  L+  S     PSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  VFACRAVRSPRSRFPNL--QDGNSFFLLVILFLYSC-FRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-13.6e-2194Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51425 60S ribosomal protein L397.2e-2296Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51426 60S ribosomal protein L39-27.2e-2296Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q5SMI4 60S ribosomal protein L39-32.1e-2194Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q6KAJ8 60S ribosomal protein L39-17.2e-2296Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein7.7e-1997.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein8.2e-2190Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein2.6e-2294Show/hide
Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTGGGCTCGATCGTCCAGAAGCTATTCTCCCGAGCAACGTCGTTTTAGCGGTCCACATAAAAACCTCATCTCCTCTTTCAACGCTCTCTCTGAAAGTAGGGTTTT
TGCTTGCCGTGCTGTTCGAAGCCCTCGCAGCCGGTTCCCGAATCTCCAAGATGGTAACTCTTTCTTCCTTCTAGTGATCTTGTTTTTGTATTCTTGTTTTCGATTCCCGT
CTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGCCTTAGGACCGACAATACCATCAGGTACAATGCG
AAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTGGGCTCGATCGTCCAGAAGCTATTCTCCCGAGCAACGTCGTTTTAGCGGTCCACATAAAAACCTCATCTCCTCTTTCAACGCTCTCTCTGAAAGTAGGGTTTT
TGCTTGCCGTGCTGTTCGAAGCCCTCGCAGCCGGTTCCCGAATCTCCAAGATGGTAACTCTTTCTTCCTTCTAGTGATCTTGTTTTTGTATTCTTGTTTTCGATTCCCGT
CTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGCCTTAGGACCGACAATACCATCAGGTACAATGCG
AAGCGAAGGCACTGGCGCCGCACTAAGCTCGGATTTTGA
Protein sequenceShow/hide protein sequence
MDWARSSRSYSPEQRRFSGPHKNLISSFNALSESRVFACRAVRSPRSRFPNLQDGNSFFLLVILFLYSCFRFPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA
KRRHWRRTKLGF