; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034256 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034256
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold13:35124489..35128129
RNA-Seq ExpressionSpg034256
SyntenySpg034256
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]1.6e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E DN+R SVF RIRP VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS
        RRL  +  +EE+T      TRPSAF RL +S
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.6e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E DN+R SVF RIRP VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS
        RRL  +  +EE+T      TRPSAF RL +S
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]8.7e-1634.34Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKR
        E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   PQG+   +E+++EGW +V   KK++    ++ESR Y++ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALETVTCHVVDVVEDD
          K+Q+ K KKK+ + K V  E  +F  P + +TLA++ P SFL D ++E  E V CH ++  E++
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALETVTCHVVDVVEDD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.1e-1353.12Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDV+SVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.6e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E DN+R SVF RIRP VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS
        RRL  +  +EE+T      TRPSAF RL +S
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]8.7e-1634.34Show/hide
Query:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKR
        E+++ L ++ V + +  E+  +     SR + E    L+QFGT +P+VV+F +E +   PQG+   +E+++EGW +V   KK++    ++ESR Y++ +R
Subjt:  ERKLNLLMKAVDERD-LEIAYLKNQLQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALETVTCHVVDVVEDD
          K+Q+ K KKK+ + K V  E  +F  P + +TLA++ P SFL D ++E  E V CH ++  E++
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALETVTCHVVDVVEDD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.1e-1353.12Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDV+SVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.6e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E DN+R SVF RIRP VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS
        RRL  +  +EE+T      TRPSAF RL +S
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.6e-3058.78Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+S+P +RKGLGYKSPEP+RIT+KGK KV DINHIT EE D++  +E DN+R SVF RIRP VAR  VF+RL + E E E +Q   N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS
        RRL  +  +EE+T      TRPSAF RL +S
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMS

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.1e-1353.12Show/hide
Query:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ
        A+A  I K + ES K  + +K+NPL+      S +     +PDV+SVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q+RE AE  Q
Subjt:  AVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQ

TrEMBL top hitse value%identityAlignment
A0A5A7TJZ7 Retrotransposon gag protein2.3e-3051.97Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+++P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  KE+E D +R S F RI P VAR  VF+RL + E E +  Q T+N  R SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTRPSVFQR
        +RL M+  +E+        TRPSAF RL+M+  +   T       RP +F R
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTRPSVFQR

A0A5A7TJZ7 Retrotransposon gag protein3.6e-0743.75Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKRKVKSQRKKGKKKSRRSK
        L+QFGT +PVVV+F +E      + K  S+E+++EGW +V R KK+K +  +KESR YR+ +R  K+++ K KKK+++ K
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKRKVKSQRKKGKKKSRRSK

A0A5A7TJZ7 Retrotransposon gag protein3.9e-3051.37Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  +E+E DN+R S F RI P VARA VF+RL + E E +  Q T+N  + SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR
        +RL ++  EE+        T+PSAF RL+++  +   T  +P + R
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR

A0A5A7UD46 Uncharacterized protein8.7e-3050.68Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +E D  +E+E D++R S F RI P VARA VF++L + E E +  Q T+N  R SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR
        +RL ++  EE+        T+PSAF RL+++  +   T L+P + R
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR

A0A5A7UMY2 Reverse transcriptase domain-containing protein5.1e-3051.37Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  +E+E DN+R S F RI P VARA VF+RL + E + +  Q T+N  R SAF
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR
        +RL ++  EE+        T+PSAF RL+++  +   T  +P + R
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR

A0A5D3BSG5 Uncharacterized protein1.3e-2850Show/hide
Query:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF
        KKLL+EG+ +P +RKGLGYKSPEP+RITRKGK KV D NHIT +EVD  +E E D++R S F RI P VAR  VF+RL + E E +  Q T+N  R S F
Subjt:  KKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASVFQRLIVNETEEESVQPTNNSTRPSAF

Query:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR
        +RL ++  EE+        T+PSAF RL+++  +   T  +P + R
Subjt:  RRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTR

A0A5D3BSG5 Uncharacterized protein1.5e-1836.9Show/hide
Query:  ERKLNLLMKAVDERDLEIAYLKNQ-LQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKR
        E+K+ L ++ V + +   A + ++ L  R + E    L+QFGT +PVVVRF +E      Q K   +E+++EGWT+V R KK+K +  +KE R YR+ ++
Subjt:  ERKLNLLMKAVDERDLEIAYLKNQ-LQSREVAE----LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKR

Query:  KVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALETVTCHVVDVVEDDDV
          K+Q+ K KKK+R+ K + EE +DF    + +TLA++FP  FL D ++E    V CH ++ +E++++
Subjt:  KVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALETVTCHVVDVVEDDDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGA
ATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGGTGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGA
AACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTT
GATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGCAGCAA
AAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCCAGGAGGTCAAAGC
CTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAATGAGCTTTCTCGATGATAGTAAAGAGGAGGCACTTGAAACT
GTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGAGCCACAAGCAGATGCAGGGAAGGAAGTTGTTGAGAATAA
GAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACA
TAAATCATATAACAGCAGAGGAGGTCGATGACTCAAAAGAAGAAGAGAACGACAACAAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTA
TTTCAAAGATTAATTGTGAATGAAACAGAAGAAGAAAGCGTACAACCTACCAATAACTCCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGTCTGTTGGGGAAGAAGA
GAATACACTTTCAATTCCGGATATCACACGACCTTCAGCTTTTAGAAGATTAAATATGTCTGTTGCGGAAGAAGATGGCACATTTTTAAGTCCGGATGTGACTCGACCAT
CAGTTTTTCAAAGATGTGATGAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGCAAGCAAGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGA
ATCTGTCGTTCCAACATCAAAGCAGCCAAAGGATACACTAAATCCTGATGTGGTGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGA
AACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTT
GATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGGCCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGCAGCAA
AAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCCAGGAGGTCAAAGC
CTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAATGAGCTTTCTCGATGATAGTAAAGAGGAGGCACTTGAAACT
GTCACGTGTCACGTTGTGGACGTGGTGGAAGATGATGACGTCCTCGCTAGCTCCTCGGGAGTGGCGGCAGAGCCACAAGCAGATGCAGGGAAGGAAGTTGTTGAGAATAA
GAAGCTTCTAAAGGAAGGCTATAGTCTGCCTACGACGAGAAAAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAGAAAAGGGAAGGCGAAAGTGGCAGACA
TAAATCATATAACAGCAGAGGAGGTCGATGACTCAAAAGAAGAAGAGAACGACAACAAACGAGCTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGCTTCAGTA
TTTCAAAGATTAATTGTGAATGAAACAGAAGAAGAAAGCGTACAACCTACCAATAACTCCACGCGACCTTCAGCTTTTCGAAGGTTAAATATGTCTGTTGGGGAAGAAGA
GAATACACTTTCAATTCCGGATATCACACGACCTTCAGCTTTTAGAAGATTAAATATGTCTGTTGCGGAAGAAGATGGCACATTTTTAAGTCCGGATGTGACTCGACCAT
CAGTTTTTCAAAGATGTGATGAAAATTGA
Protein sequenceShow/hide protein sequence
IEIKEDHTPLAVASKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVVSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTL
DPVVVRFQKEATMRGPQGKYNSVEDENEGWTLVVRSKKQKQSYARKESRLYRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCPPQPITLAEYFPMSFLDDSKEEALET
VTCHVVDVVEDDDVLASSSGVAAEPQADAGKEVVENKKLLKEGYSLPTTRKGLGYKSPEPVRITRKGKAKVADINHITAEEVDDSKEEENDNKRASVFRRIRPPVARASV
FQRLIVNETEEESVQPTNNSTRPSAFRRLNMSVGEEENTLSIPDITRPSAFRRLNMSVAEEDGTFLSPDVTRPSVFQRCDEN