CuGenDBv2

Gene ID	Spg034257
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Genome location	scaffold13:36283516..36287973
RNA-Seq Expression	Spg034257
Synteny	Spg034257
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR023029 - Ribosomal protein S15P

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8693790.1 40S ribosomal protein S13 [Hibiscus syriacus]

1.3e-23

93.65

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Query:  NLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        +LSGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  NLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

KAF1002335.1 hypothetical protein AG4045_021514 [Apium graveolens]

2.8e-23

86.76

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Query:  NGKTENLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        +G  +  SGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  NGKTENLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

KAF3519016.1 hypothetical protein DY000_02061849 [Brassica cretica]

4.8e-23

95.08

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Query:  SGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        SGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  SGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

PPS00109.1 hypothetical protein GOBAR_AA20554 [Gossypium barbadense]

1.6e-23

95.16

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Query:  LSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        LSGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  LSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

6.2e-23

96.67

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

TrEMBL top hits

e value

%identity

Alignment

A0A2P5X9U0 Ribosomal_S13_N domain-containing protein

7.9e-24

95.16

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Query:  LSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        LSGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  LSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A6A2ZPW0 40S ribosomal protein S13

6.1e-24

93.65

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Query:  NLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        +LSGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  NLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A6J1HYG9 40S ribosomal protein S13-like

3.0e-23

96.67

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A6J1KV63 40S ribosomal protein S13-like

3.0e-23

96.67

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

A0A6L5BAA8 Ribosomal_S13_N domain-containing protein

1.3e-23

86.76

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Query:  NGKTENLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        +G  +  SGLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  NGKTENLSGLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

9.0e-25

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AVSIRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

P59223 40S ribosomal protein S13-1

1.8e-25

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

P59224 40S ribosomal protein S13-2

1.8e-25

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

P62302 40S ribosomal protein S13

8.1e-26

96.67

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

Q69UI2 40S ribosomal protein S13-1

1.3e-23

91.53

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPP
        GLAPEIPEDLY LIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKK PP
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPP

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

1.3e-26

Show/hide

Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

AT4G00100.1 ribosomal protein S13A

1.3e-26

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Query:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV
        GLAPEIPEDLYHLIK+AV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKK PPV
Subjt:  GLAPEIPEDLYHLIKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

Sequences

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CDS sequence

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ATGGGTTTCTTTTCCATTTCATTGTCCCAAATATCTCTTTGTTCTCTGTTCTCTCTTGAAGAGGTAGGCATCTCTGATATTTGTGTTTGGCATTTTGTCGGCTGTAATCG
TCTTGGAAGTATAGATGCGCTTGATACTCAATTTGTTCATGACTTTGAGATGATTCCTTTGCCCGTTTCAACATCTGTTGGTTGTTTGATAGAATGCACAAATCCTGTTG
AACATTCTAGTTATCTTCCATTTGGAATGAGACTTGAGGTTGCTGTGAATGGGAAAACTGAAAATTTATCTGGACTAGCTCCTGAAATCCCGGAGGATCTTTACCATCTC
ATCAAGGAAGCTGTTTCAATCCGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTA
TTACAAGAAGACAAAGAAGTTTCCCCCTGTTTAG

mRNA sequence

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Protein sequence

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MGFFSISLSQISLCSLFSLEEVGISDICVWHFVGCNRLGSIDALDTQFVHDFEMIPLPVSTSVGCLIECTNPVEHSSYLPFGMRLEVAVNGKTENLSGLAPEIPEDLYHL
IKEAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKFPPV

Spg034257 (gene) of Sponge gourd (cylindrica) v1 genome