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Spg034269 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034269
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:20876330..20880112
RNA-Seq ExpressionSpg034269
SyntenySpg034269
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1654.39Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDD
        PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWL                           NVSVGST  VRGD+
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDD

Query:  VCWLHAVFRAKLAG
        VCWLHAVF AK AG
Subjt:  VCWLHAVFRAKLAG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]8.7e-1751.24Show/hide
Query:  EEFRGLRLKKIRKAHAKPAIAES---EPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLNV---SV---------------------GST
        EE RG   + + K+      +++    PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWL +   SV                     GS 
Subjt:  EEFRGLRLKKIRKAHAKPAIAES---EPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLNV---SV---------------------GST

Query:  GTVRGDDVCWLHAVFRAKLAG
        G VRGDD+CWLHAVF AK AG
Subjt:  GTVRGDDVCWLHAVFRAKLAG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.3e-1654.46Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC
        PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWL                           NVSVGSTG VRGDDVC
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC

Query:  WLHAVFRAKLAG
        WLHAVFRAK  G
Subjt:  WLHAVFRAKLAG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]4.3e-1653.15Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV------------------------GSTGTVRGDDVCW
        PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+SSTWL +                          GS G VRGDDVCW
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV------------------------GSTGTVRGDDVCW

Query:  LHAVFRAKLAG
        LH VFRAK+AG
Subjt:  LHAVFRAKLAG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.0e-1756.25Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWL                           NVSVGSTG VRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC

Query:  WLHAVFRAKLAG
        WLHAVFRAK  G
Subjt:  WLHAVFRAKLAG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.5e-1754.39Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDD
        PRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWL                           NVSVGST  VRGD+
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDD

Query:  VCWLHAVFRAKLAG
        VCWLHAVF AK AG
Subjt:  VCWLHAVFRAKLAG

A0A5A7UAH6 CCHC-type domain-containing protein4.2e-1751.24Show/hide
Query:  EEFRGLRLKKIRKAHAKPAIAES---EPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLNV---SV---------------------GST
        EE RG   + + K+      +++    PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWL +   SV                     GS 
Subjt:  EEFRGLRLKKIRKAHAKPAIAES---EPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLNV---SV---------------------GST

Query:  GTVRGDDVCWLHAVFRAKLAG
        G VRGDD+CWLHAVF AK AG
Subjt:  GTVRGDDVCWLHAVFRAKLAG

A0A5A7UT17 CCHC-type domain-containing protein2.1e-1654.46Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC
        PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWL                           NVSVGSTG VRGDDVC
Subjt:  PRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC

Query:  WLHAVFRAKLAG
        WLHAVFRAK  G
Subjt:  WLHAVFRAKLAG

A0A5A7VIY9 Uncharacterized protein2.1e-1653.15Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV------------------------GSTGTVRGDDVCW
        PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+SSTWL +                          GS G VRGDDVCW
Subjt:  PRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLNVSV------------------------GSTGTVRGDDVCW

Query:  LHAVFRAKLAG
        LH VFRAK+AG
Subjt:  LHAVFRAKLAG

A0A5D3CJX3 CCHC-type domain-containing protein5.0e-1856.25Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWL                           NVSVGSTG VRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWL---------------------------NVSVGSTGTVRGDDVC

Query:  WLHAVFRAKLAG
        WLHAVFRAK  G
Subjt:  WLHAVFRAKLAG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATTAAGCTCCAGTACGTGGTTGGAGTTGTATATTGA
GTCCCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGC
CAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGC
TCCAGTACGTGGTTGAACGTTTCAGTAGGGTCAACAGGGACCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGGGTGCAGCATCT
CGATGCTGCAGCTTCATCTTCACGGCCAAGAAGCTTTCCTTATTTGAGTTGCGTCCCGACCCTTATAAGACAACGTCTCGATGCTGCGACATCTCCAGGGGCAAAATGGT
TTTTTTACGCGCTTGTTTTGCTCGTTTTAGCCCCGAATCGCTTCCGAAGCTCCGACGAGGACCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATTAAGCTCCAGTACGTGGTTGGAGTTGTATATTGA
GTCCCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGC
CAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGC
TCCAGTACGTGGTTGAACGTTTCAGTAGGGTCAACAGGGACCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGGGTGCAGCATCT
CGATGCTGCAGCTTCATCTTCACGGCCAAGAAGCTTTCCTTATTTGAGTTGCGTCCCGACCCTTATAAGACAACGTCTCGATGCTGCGACATCTCCAGGGGCAAAATGGT
TTTTTTACGCGCTTGTTTTGCTCGTTTTAGCCCCGAATCGCTTCCGAAGCTCCGACGAGGACCTATAG
Protein sequenceShow/hide protein sequence
MFSTFQVEIELLVPDTLPTSAESSRLSSSTWLELYIESHLRERVKEEEEEEFRGLRLKKIRKAHAKPAIAESEPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSS
SSTWLNVSVGSTGTVRGDDVCWLHAVFRAKLAGVQHLDAAASSSRPRSFPYLSCVPTLIRQRLDAATSPGAKWFFYALVLLVLAPNRFRSSDEDL