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Spg034273 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034273
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:21100861..21105654
RNA-Seq ExpressionSpg034273
SyntenySpg034273
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERFARSA+EI RPEKAGPSD EKMY IE LKKLGATVF+GSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
KAA0056353.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERF+RSA+EI RPEKAGPSD EKMYGIE LKKL ATVFDGSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERFARSA+EI RPEKAGPSD EKMY IE LKKLGATVF+GSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
TYK29162.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERF+RSA+EI RPEKAGPSD EKMYGIE LKKL ATVFDGSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
XP_016901625.1 PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo]2.0e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERF+RSA+EI RPEKAGPSD EKMYGIE LKKL ATVFDGSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
TrEMBL top hitse value%identityAlignment
A0A1S4E0X6 uncharacterized protein LOC1079913209.7e-2185.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERF+RSA+EI RPEKAGPSD EKMYGIE LKKL ATVFDGSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
A0A5A7TKT0 Reverse transcriptase1.6e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERFARSA+EI RPEKAGPSD EKMY IE LKKLGATVF+GSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
A0A5A7UKD3 DNA/RNA polymerases superfamily protein9.7e-2185.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERF+RSA+EI RPEKAGPSD EKMYGIE LKKL ATVFDGSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
A0A5D3D150 Reverse transcriptase1.6e-2085.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERFARSA+EI RPEKAGPSD EKMY IE LKKLGATVF+GSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
A0A5D3DZW6 DNA/RNA polymerases superfamily protein9.7e-2185.29Show/hide
Query:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
        +Q QSERGSSTPRGQNEAGSERF+RSA+EI RPEKAGPSD EKMYGIE LKKL ATVFDGSTD AD E
Subjt:  SQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTGTTTTTCCTCTGTTGTCGGCTCCAAAAACTCATCTTCCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGGGAGTGAGCGATT
TGCTAGATCTGCACGAGAGATCTGTAGGCCAGAGAAAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACTGTTGAAGAAGTTAGGAGCCACAGTGTTTGACG
GTTCCACAGATTCAGCTGACGTCGAGAACATGCATGCTTTAGGAGTAAAATTGATAGAGTTAAGTGCTTTTGGTCTTCAATTGCTTCCGCATGTGTTATATGAACACCTT
CAATACTCCCGCTTGCATGTCTACTACATGGACGGTGGGGTGAAAGACATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCTGAAGGCTCCGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCTGTTTTTCCTCTGTTGTCGGCTCCAAAAACTCATCTTCCCAAAGTCAATCTGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGCAGGGAGTGAGCGATT
TGCTAGATCTGCACGAGAGATCTGTAGGCCAGAGAAAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACTGTTGAAGAAGTTAGGAGCCACAGTGTTTGACG
GTTCCACAGATTCAGCTGACGTCGAGAACATGCATGCTTTAGGAGTAAAATTGATAGAGTTAAGTGCTTTTGGTCTTCAATTGCTTCCGCATGTGTTATATGAACACCTT
CAATACTCCCGCTTGCATGTCTACTACATGGACGGTGGGGTGAAAGACATCTCATTCATTCTCCTACTCTCAGAGAATTCTCCTGAAGGCTCCGTCTAG
Protein sequenceShow/hide protein sequence
MLCFSSVVGSKNSSSQSQSERGSSTPRGQNEAGSERFARSAREICRPEKAGPSDSEKMYGIELLKKLGATVFDGSTDSADVENMHALGVKLIELSAFGLQLLPHVLYEHL
QYSRLHVYYMDGGVKDISFILLLSENSPEGSV