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Spg034278 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034278
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold10:20852360..20862704
RNA-Seq ExpressionSpg034278
SyntenySpg034278
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]5.3e-1565.38Show/hide
Query:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        L GLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSAES RS+S+TWLELY ES+
Subjt:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV

KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]3.7e-1680.33Show/hide
Query:  LEGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        L  LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESV
Subjt:  LEGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.7e-1465.38Show/hide
Query:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        L GL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E V
Subjt:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.7e-1385.71Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]2.9e-1387.76Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ESV
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.8e-1680.33Show/hide
Query:  LEGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        L  LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTWLELY ESV
Subjt:  LEGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV

A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.7e-1465.38Show/hide
Query:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        L GL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E V
Subjt:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV

A0A5A7UAH6 CCHC-type domain-containing protein8.3e-1485.71Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV

A0A5D3BET3 Uncharacterized protein1.4e-1387.76Show/hide
Query:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        PRGNR S QTG+LDKTVEIELPVPDTLPTSAESS S+SSTWLELY ESV
Subjt:  PRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESV

A0A5D3DIM8 Uncharacterized protein2.6e-1565.38Show/hide
Query:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV
        L GLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSAES RS+S+TWLELY ES+
Subjt:  LEGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACACAAGAAGGAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCAGTTTGTAAGTCCAAGTCGAGCATACGGAT
GCCGATTGTTGAAATCGCAGACGAATTCGAGACGCATGGTGAAGGTGCAGCCTGTTCAGTTGGTTGGGACCTTTTTGGTCCGTTCAACCCGGTTTTAGCTCAGTTCGTGG
TTTTCGAAGCTGGTTCGAAGAAGCTAAGCAATGAGAAGCGTACCTTCGTTGATGACTCTGAATACTTCAACGGACACCACCACTTGGTTTCCTTGCTATCCTCTGAGTTT
GGGAACGGAGTGGTGGGACTCTATGACCTCTTGATTTTGGGAAGTGAATTAGAGAATAAAGGGTGTCGCTACGGGTTTGCGACGTGGAGCGGCCGACTTTGTTCCCAAGA
GGAGGAAAATGGAGTCGCCACCAGTCTTGATTTAGAGGGTTTGAGCTACACAGAAGGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATA
AGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCAACGT
TTCCGTAGGGTCAACAGGGACCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACACAAGAAGGAATTCACTCCTTCCCGCTTCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCAGTTTGTAAGTCCAAGTCGAGCATACGGAT
GCCGATTGTTGAAATCGCAGACGAATTCGAGACGCATGGTGAAGGTGCAGCCTGTTCAGTTGGTTGGGACCTTTTTGGTCCGTTCAACCCGGTTTTAGCTCAGTTCGTGG
TTTTCGAAGCTGGTTCGAAGAAGCTAAGCAATGAGAAGCGTACCTTCGTTGATGACTCTGAATACTTCAACGGACACCACCACTTGGTTTCCTTGCTATCCTCTGAGTTT
GGGAACGGAGTGGTGGGACTCTATGACCTCTTGATTTTGGGAAGTGAATTAGAGAATAAAGGGTGTCGCTACGGGTTTGCGACGTGGAGCGGCCGACTTTGTTCCCAAGA
GGAGGAAAATGGAGTCGCCACCAGTCTTGATTTAGAGGGTTTGAGCTACACAGAAGGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATA
AGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCAACGT
TTCCGTAGGGTCAACAGGGACCGTTAA
Protein sequenceShow/hide protein sequence
MTTQEGIHSFPLLGEVDECPLGPPASSVCKSKSSIRMPIVEIADEFETHGEGAACSVGWDLFGPFNPVLAQFVVFEAGSKKLSNEKRTFVDDSEYFNGHHHLVSLLSSEF
GNGVVGLYDLLILGSELENKGCRYGFATWSGRLCSQEEENGVATSLDLEGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVQR
FRRVNRDR