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Spg034280 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034280
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:21179258..21186674
RNA-Seq ExpressionSpg034280
SyntenySpg034280
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.4e-1755Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIE---------------------GQRVSLEEDDVRWLHAIFRTKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESV++E                     G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIE---------------------GQRVSLEEDDVRWLHAIFRTKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-2262.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]2.1e-2639.53Show/hide
Query:  SESSHRNVNNGKVHH---RLTHSSHIS--QYFPPKISEHLRERVKEEEEEDCRGLRLKKIGKAHAKPAIAESGIFEQSRRISGFLWF---LEHSGVYKLN
        S  S   +   KVHH    L   + IS   +FP K+SEH  ERVKEEEEE  RGLRLKKIGK+  K           S +  GFL F   L    V K N
Subjt:  SESSHRNVNNGKVHH---RLTHSSHIS--QYFPPKISEHLRERVKEEEEEDCRGLRLKKIGKAHAKPAIAESGIFEQSRRISGFLWF---LEHSGVYKLN

Query:  QKLYLGQDRMGAGNITVQD-GIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQV-------------------------------------
        QKLY   +   +G   V   G  S L  G+       D  EISIDYMTEILS RLYGTVC QV                                     
Subjt:  QKLYLGQDRMGAGNITVQD-GIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQV-------------------------------------

Query:  --------------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVY-----IEGQRVSLE--------EDDVRWLHAIFRTKLAGGPGG
                            EIEL VPDTLPTSAESS S+SSTW+E   E  Y         R+  E        E+DV WLHA+FR K+AGG GG
Subjt:  --------------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVY-----IEGQRVSLE--------EDDVRWLHAIFRTKLAGGPGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1851.67Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI------------------EGQRVSLEE
        +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESV++                  EG    +  
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI------------------EGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGPGG
        DDV WLHA+FR K AGGP G
Subjt:  DDVRWLHAIFRTKLAGGPGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-2262.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein6.7e-1855Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIE---------------------GQRVSLEEDDVRWLHAIFRTKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESV++E                     G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIE---------------------GQRVSLEEDDVRWLHAIFRTKLAGGPG

A0A5A7VMG9 Reverse transcriptase3.4e-2262.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG

A0A5D3CAC6 Uncharacterized protein1.0e-2639.53Show/hide
Query:  SESSHRNVNNGKVHH---RLTHSSHIS--QYFPPKISEHLRERVKEEEEEDCRGLRLKKIGKAHAKPAIAESGIFEQSRRISGFLWF---LEHSGVYKLN
        S  S   +   KVHH    L   + IS   +FP K+SEH  ERVKEEEEE  RGLRLKKIGK+  K           S +  GFL F   L    V K N
Subjt:  SESSHRNVNNGKVHH---RLTHSSHIS--QYFPPKISEHLRERVKEEEEEDCRGLRLKKIGKAHAKPAIAESGIFEQSRRISGFLWF---LEHSGVYKLN

Query:  QKLYLGQDRMGAGNITVQD-GIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQV-------------------------------------
        QKLY   +   +G   V   G  S L  G+       D  EISIDYMTEILS RLYGTVC QV                                     
Subjt:  QKLYLGQDRMGAGNITVQD-GIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQV-------------------------------------

Query:  --------------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVY-----IEGQRVSLE--------EDDVRWLHAIFRTKLAGGPGG
                            EIEL VPDTLPTSAESS S+SSTW+E   E  Y         R+  E        E+DV WLHA+FR K+AGG GG
Subjt:  --------------------EIELPVPDTLPTSAESSRSSSSTWVELYIESVY-----IEGQRVSLE--------EDDVRWLHAIFRTKLAGGPGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein6.0e-1951.67Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI------------------EGQRVSLEE
        +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESV++                  EG    +  
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYI------------------EGQRVSLEE

Query:  DDVRWLHAIFRTKLAGGPGG
        DDV WLHA+FR K AGGP G
Subjt:  DDVRWLHAIFRTKLAGGPGG

A0A5D3DX39 Reverse transcriptase3.4e-2262.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V++E   ++  + EDDV WLHA+FR K AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQRVS--LEEDDVRWLHAIFRTKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGACAAGACCGAGTGGGAGGTTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACT
TCTAGGAGAAGTAGATGAGTGTTCTTCATTAGAGAAGCGCTGGAAAACAGAGGAAAAGCTGGAATTTTCCCCGCATTTATGGGAAGGCAAAATGAAATGCGGCCGCATTT
CTGGAAAAGCTGGGGTAGTTCTGAGTCGTCTGTGGGTCCTTTTGAACGAGACTTCTTCGCACCTAATCGACTGTTTTGACCCCGAAACCGTCTGGGCTACCTACCAGCAC
CTATTTCGTAGCTCCTCAACAATTTCCAACACTATATTAGCTCTTGATTCGAAGATTATAGATTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGAA
TAACGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAG
ATTGTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTT
TTAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCATTCCTTCCTCTATTG
GGGCAAGCATGTTCTAACGTTTTCATGTGATTTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGAGGGTCAACGG
GTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGCCGGGAGGGGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTTCTTTTTGGGACAAGACCGAGTGGGAGGTTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACT
TCTAGGAGAAGTAGATGAGTGTTCTTCATTAGAGAAGCGCTGGAAAACAGAGGAAAAGCTGGAATTTTCCCCGCATTTATGGGAAGGCAAAATGAAATGCGGCCGCATTT
CTGGAAAAGCTGGGGTAGTTCTGAGTCGTCTGTGGGTCCTTTTGAACGAGACTTCTTCGCACCTAATCGACTGTTTTGACCCCGAAACCGTCTGGGCTACCTACCAGCAC
CTATTTCGTAGCTCCTCAACAATTTCCAACACTATATTAGCTCTTGATTCGAAGATTATAGATTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGAA
TAACGGTAAAGTCCACCACCGTTTAACTCATTCCAGCCACATTTCTCAATATTTTCCACCCAAAATTTCAGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAG
ATTGTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTTTGGTTT
TTAGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCATTCCTTCCTCTATTG
GGGCAAGCATGTTCTAACGTTTTCATGTGATTTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGA
TCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTATATTGAGGGTCAACGG
GTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGCCGGGAGGGGGTGTGA
Protein sequenceShow/hide protein sequence
MGESGQYADSICLSFWDKTEWEVGDMTTQEGIHSFPLLGEVDECSSLEKRWKTEEKLEFSPHLWEGKMKCGRISGKAGVVLSRLWVLLNETSSHLIDCFDPETVWATYQH
LFRSSSTISNTILALDSKIIDCIRELSMSESSHRNVNNGKVHHRLTHSSHISQYFPPKISEHLRERVKEEEEEDCRGLRLKKIGKAHAKPAIAESGIFEQSRRISGFLWF
LEHSGVYKLNQKLYLGQDRMGAGNITVQDGIHSFLYWGKHVLTFSCDFSEISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVYIEGQR
VSLEEDDVRWLHAIFRTKLAGGPGGREGV