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Spg034292 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034292
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA replication complex GINS protein PSF2
Genome locationscaffold2:49993085..49993627
RNA-Seq ExpressionSpg034292
SyntenySpg034292
Gene Ontology termsGO:0000727 - double-strand break repair via break-induced replication (biological process)
GO:0006260 - DNA replication (biological process)
GO:0000811 - GINS complex (cellular component)
InterPro domainsIPR007257 - DNA replication complex GINS protein Psf2
IPR021151 - GINS subunit, domain A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022925112.1 DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita moschata]2.8e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

XP_022925113.1 DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita moschata]2.8e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

XP_022966457.1 DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita maxima]2.8e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

XP_023517317.1 DNA replication complex GINS protein PSF2 isoform X1 [Cucurbita pepo subsp. pepo]2.8e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

XP_023517318.1 DNA replication complex GINS protein PSF2 isoform X2 [Cucurbita pepo subsp. pepo]2.8e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

TrEMBL top hitse value%identityAlignment
A0A0A0KVY8 Sld5 domain-containing protein1.0e-2483.58Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGKF
        +VEFV EDEMVEI+PNMRM+ L+LICG+YG FYPQIATEVPLWLAI LKKRGKCAIR  EWMSVGKF
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGKF

A0A6J1EAX5 DNA replication complex GINS protein PSF21.3e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

A0A6J1EEB6 DNA replication complex GINS protein PSF21.3e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

A0A6J1HN13 DNA replication complex GINS protein PSF21.3e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

A0A6J1HPD8 DNA replication complex GINS protein PSF21.3e-2484.85Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        ++EFV EDEMVEIVPNMRM+ LNLICG+YG FYPQIATEVPLWLAI LKKRGKCAIRP EWMSV K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

SwissProt top hitse value%identityAlignment
Q54BL9 Probable DNA replication complex GINS protein PSF21.6e-1450Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        Q+EF+ ED  + +VPN +ME L  + G YG F P    E+PLWLAI+LKK+ KC I P +WM+  K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

Q7ZT46 DNA replication complex GINS protein PSF25.1e-1351.52Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        +VEF+ E E V ++PN  ++ + LI G+ G F P +  EVPLWLAI LK+R KC I P EWM V K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

Q9C7A8 DNA replication complex GINS protein PSF21.2e-1967.19Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV
        +VEF+ EDE+VEIVPNM ME LN I G++G F PQI T+VPLWLA+ LK+RGKC  RP  WMSV
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV

Q9D600 DNA replication complex GINS protein PSF28.6e-1350Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        +VEF+ E E+V I+PN  ++ + LI G+ G F P +  +VPLWLAI LK+R KC + P EWM V K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

Q9Y248 DNA replication complex GINS protein PSF23.9e-1351.52Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK
        +VEF+ E E+V I+PN  ++ + LI G+ G F P +  EVPLWLAI LK+R KC + P EWM V K
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGK

Arabidopsis top hitse value%identityAlignment
AT3G12530.1 PSF28.8e-2167.19Show/hide
Query:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV
        +VEF+ EDE+VEIVPNM ME LN I G++G F PQI T+VPLWLA+ LK+RGKC  RP  WMSV
Subjt:  QVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV

AT3G12530.2 PSF24.9e-1966.67Show/hide
Query:  VVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV
        + EDE+VEIVPNM ME LN I G++G F PQI T+VPLWLA+ LK+RGKC  RP  WMSV
Subjt:  VVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCATGTCCAAGTTGAGTTTGTGGTCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGAACCTCTGAATTTGATTTGTGGGAATTATGGTACGTTCTATCC
TCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTACTCTGAAAAAAAGAGGAAAATGTGCAATTAGGCCTCTAGAGTGGATGTCAGTAGGTAAGTTCTATTGTGGCT
ACAAGTCCTTATAA
mRNA sequenceShow/hide mRNA sequence
ATCCATGTCCAAGTTGAGTTTGTGGTCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGAACCTCTGAATTTGATTTGTGGGAATTATGGTACGTTCTATCC
TCAAATAGCAACTGAAGTTCCATTGTGGCTAGCGATTACTCTGAAAAAAAGAGGAAAATGTGCAATTAGGCCTCTAGAGTGGATGTCAGTAGGTAAGTTCTATTGTGGCT
ACAAGTCCTTATAA
Protein sequenceShow/hide protein sequence
IHVQVEFVVEDEMVEIVPNMRMEPLNLICGNYGTFYPQIATEVPLWLAITLKKRGKCAIRPLEWMSVGKFYCGYKSL