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Spg034309 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034309
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold12:21513776..21515901
RNA-Seq ExpressionSpg034309
SyntenySpg034309
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.8e-2551.57Show/hide
Query:  TVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCM
        TVNLW F+ F L       R RGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E V  +           
Subjt:  TVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCM

Query:  LKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                  +F       M  + + FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  LKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]5.0e-2845.07Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIWVQTVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   +    +    T+NLW F+   L      +R RGNR SLQTG+LDKT
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIWVQTVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT

Query:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MIS
                                    VEIELP+PDTLPT AES  S+SSTWLELY ESV  +                        + C+++   M  
Subjt:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MIS

Query:  MFIRFNVSVGSTG
        + + FN+SVG TG
Subjt:  MFIRFNVSVGSTG

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]1.8e-3056.33Show/hide
Query:  ELHRRNQE---VRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCML
        E+ + NQ+   V  RGN  SLQTGELDKT                 VEIELPV DTL TSAESS S+SSTWL+LY ES+  +      + +     +C  
Subjt:  ELHRRNQE---VRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCML

Query:  KGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        +GFRGFRCVVF +E  IS I MFIRFNVSVGSTGIVRG+DV W H VFRAK AGG GG
Subjt:  KGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]5.2e-3338.33Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRS
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCK +HCRIW                      VQ  N   +   E  +  + +V  
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRS

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SSTWLE   E     + +     +C                               V S GIVR +DVCWLHAVFRAK+AGG GG
Subjt:  VPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.1e-2653.25Show/hide
Query:  ELHRRNQE--VRSRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCV
        E+H+ NQ+  +  RGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV                        
Subjt:  ELHRRNQE--VRSRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCV

Query:  VFRIECFIS-----MISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
           +E F S     M  + + FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  VFRIECFIS-----MISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein3.3e-2551.57Show/hide
Query:  TVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCM
        TVNLW F+ F L       R RGNR+SLQTGELDKT                 VEIELPVPDTLPTSAESS S+SSTWLEL  E V  +           
Subjt:  TVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCM

Query:  LKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
                  +F       M  + + FNVSVGST IVRGD+VCWLHAVF AK AGGPGG
Subjt:  LKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UEC1 Uncharacterized protein8.9e-3156.33Show/hide
Query:  ELHRRNQE---VRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCML
        E+ + NQ+   V  RGN  SLQTGELDKT                 VEIELPV DTL TSAESS S+SSTWL+LY ES+  +      + +     +C  
Subjt:  ELHRRNQE---VRSRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCML

Query:  KGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        +GFRGFRCVVF +E  IS I MFIRFNVSVGSTGIVRG+DV W H VFRAK AGG GG
Subjt:  KGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5A7UGD0 Uncharacterized protein2.4e-2845.07Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIWVQTVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT
        TKPTTD  IFQ NFI FLHHF  KLSE+F+ERVK EEEEEFRGLRLKK+ K   +    +    T+NLW F+   L      +R RGNR SLQTG+LDKT
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIWVQTVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKT

Query:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MIS
                                    VEIELP+PDTLPT AES  S+SSTWLELY ESV  +                        + C+++   M  
Subjt:  ----------------------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MIS

Query:  MFIRFNVSVGSTG
        + + FN+SVG TG
Subjt:  MFIRFNVSVGSTG

A0A5D3CAC6 Uncharacterized protein2.5e-3338.33Show/hide
Query:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRS
        +FQPNFISFLHHFP KLSEHFEERVK EEEEEFRGLRLKKIGKSSCK +HCRIW                      VQ  N   +   E  +  + +V  
Subjt:  IFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIW----------------------VQTVNLWFFIRFELHRRNQ-EVRS

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        VPDTLPTSAESS S+SSTWLE   E     + +     +C                               V S GIVR +DVCWLHAVFRAK+AGG GG
Subjt:  VPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein1.0e-2653.25Show/hide
Query:  ELHRRNQE--VRSRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCV
        E+H+ NQ+  +  RGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV                        
Subjt:  ELHRRNQE--VRSRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCV

Query:  VFRIECFIS-----MISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG
           +E F S     M  + + FNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  VFRIECFIS-----MISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGTCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCAC
CATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAATGTTTCAGTAGGGTCAA
CAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGAGCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGTCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTG
CCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCAC
CATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAATGTTTCAGTAGGGTCAA
CAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSEHFEERVKEEEEEEFRGLRLKKIGKSSCKVSHCRIWVQTVNLWFFIRFELHRRNQEVRSRGNRSSLQTGELDKTVEIELPV
PDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG