; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg034314 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg034314
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold12:21679403..21681601
RNA-Seq ExpressionSpg034314
SyntenySpg034314
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1262.2Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS
        QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VEIELPV DTLPTS ES  S+SS+
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS

KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]6.0e-1156.18Show/hide
Query:  PRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        PRGNRLSLQT EL KT                 VEIELPVSDTLP SAESS S+S S         + EDDV WLH +FR K AGGPGG
Subjt:  PRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]7.1e-1239.62Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT---------------------------------VEIELPVSDTLPTSAE----------
        QVESEALF MVGKLIQ+PTT MK  PRGNR SLQT EL KT                                 VEIELPV DTLPTSA+          
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT---------------------------------VEIELPVSDTLPTSAE----------

Query:  -------------------SSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
                           S   ++S    EG    +  DDV  +HA+F+ K AG PGG
Subjt:  -------------------SSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]5.2e-1578.46Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSRSSSSS
        QVESEALFGMV KLIQ+PTTFM   PRGNR S QT +L KTVEIELPV DTLPTSAESS S+SS+
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSRSSSSS

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1262.2Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS
        QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VEIELPV DTLPTS ES  S+SS+
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase2.0e-1262.2Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS
        QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VEIELPV DTLPTS ES  S+SS+
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS

A0A5A7TPS6 Retrotrans_gag domain-containing protein3.4e-1239.62Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT---------------------------------VEIELPVSDTLPTSAE----------
        QVESEALF MVGKLIQ+PTT MK  PRGNR SLQT EL KT                                 VEIELPV DTLPTSA+          
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT---------------------------------VEIELPVSDTLPTSAE----------

Query:  -------------------SSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
                           S   ++S    EG    +  DDV  +HA+F+ K AG PGG
Subjt:  -------------------SSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5D3BET3 Uncharacterized protein2.5e-1578.46Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSRSSSSS
        QVESEALFGMV KLIQ+PTTFM   PRGNR S QT +L KTVEIELPV DTLPTSAESS S+SS+
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSRSSSSS

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.9e-1156.18Show/hide
Query:  PRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG
        PRGNRLSLQT EL KT                 VEIELPVSDTLP SAESS S+S S         + EDDV WLH +FR K AGGPGG
Subjt:  PRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGG

A0A5D3BV68 Reverse transcriptase2.0e-1262.2Show/hide
Query:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS
        QVESEA  G VGKLIQ+PTTFMK  PRGNR SLQTREL KT                 VEIELPV DTLPTS ES  S+SS+
Subjt:  QVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKT-----------------VEIELPVSDTLPTSAESSRSSSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCCGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTTGAGTCTACAGACCAGGGAACTAGCTAAGACAGTAG
AGATCGAGCTCCCGGTATCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGAT
GTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGCGTCGCGACGCTGTCCCAAATCCGGGCCTATAAAAGGCGCCCCTTGGTGCCCATT
TTATGCATCAATCATTCATTCTTCCACCCATTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTTCTCTCAAGGCTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCCTCTGGTGTTTCGAGCATTCCGGGTTGTACAAGTTGAATCAGAAGC
TCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGCCAAGAGGAAATAGGTTGAGTCTACAGACCAGGGAACTAGCTAAGACAGTAG
AGATCGAGCTCCCGGTATCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGAT
GTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGCGTCGCGACGCTGTCCCAAATCCGGGCCTATAAAAGGCGCCCCTTGGTGCCCATT
TTATGCATCAATCATTCATTCTTCCACCCATTCCTTTCTTTCCTTGGCTCCTTTGGAGCCTTCTCTCAAGGCTTTTTAG
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFPLVFRAFRVVQVESEALFGMVGKLIQFPTTFMKNSPRGNRLSLQTRELAKTVEIELPVSDTLPTSAESSRSSSSSTFQEGQRVSLEEDD
VRWLHAIFRTKLAGGPGGASRRCPKSGPIKGAPWCPFYASIIHSSTHSFLSLAPLEPSLKAF